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SCNpilot_expt_1000_bf_scaffold_5623

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5623_1
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..159
DNA (159bp) protein (53aa)
Probable amino acid-binding protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GL83_9BURK
cationic amino acid ABC transporter periplasmic binding protein; K09969 general L-amino acid transport system substrate-binding protein
Probable amino acid-binding protein {ECO:0000313|EMBL:EDM84764.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
SCNpilot_expt_1000_bf_scaffold_5623_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..1069)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGP0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64349.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5623_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1274..2125)
DNA (852bp) protein (284aa)
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / D
Succinyl-diaminopimelate desuccinylase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPG6_HYPDA
SCNpilot_expt_1000_bf_scaffold_5623_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2122..2418)
DNA (297bp) protein (99aa)
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / D
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000367A693
SCNpilot_expt_1000_bf_scaffold_5623_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2692..3378)
DNA (687bp) protein (229aa)
Chemotaxis protein CheY n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBY9_9RHIZ rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:AHB47489.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
two component transcriptional regulator PhoB, winged helix family protein rbh
SCNpilot_expt_1000_bf_scaffold_5623_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3554..4273)
DNA (720bp) protein (240aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7I1_9RHIZ
phosphate uptake regulator PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5623_7
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4410..5747)
DNA (1338bp) protein (446aa)
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003642741 rbh
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_5623_8
unknown

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comp(5889..6257)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_9
unknown

Not on your lists

comp(6262..6867)
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6900..7223
DNA (324bp) protein (108aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5B111
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_5623_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7334..7828)
DNA (495bp) protein (165aa)
glutathione S-transferase-like protein (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V864_9BRAD
Glutathione S-transferase domain protein {ECO:0000313|EMBL:EFI51424.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_5623_12
Mycobacterium liflandii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7978..8394
DNA (417bp) protein (139aa)
gloA_3; glyoxalase, GloA_3 (EC:4.4.1.5)
Glyoxalase, GloA_3 {ECO:0000313|EMBL:AGC63908.1}; EC=4.4.1.5 {ECO:0000313|EMBL:AGC63908.1};; TaxID=459424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium liflandii (strain 128FXT).;"
Glyoxalase, GloA_3 n=3 Tax=Mycobacterium RepID=L7VBV0_MYCL1
SCNpilot_expt_1000_bf_scaffold_5623_13
unknown

Not on your lists

8387..8590
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8594..10153
DNA (1560bp) protein (520aa)
Carbohydrate kinase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8C2_9RHIZ rbh
carbohydrate kinase rbh
Carbohydrate kinase {ECO:0000313|EMBL:AGK58477.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5623_15
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10863..11249
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1E2_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86948.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5623_16
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11187..12050)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1F4_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86963.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5623_17
unknown

Not on your lists

comp(12192..12860)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000369492A
Extensin family protein {ECO:0000313|EMBL:CPR22518.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Extensin family protein
SCNpilot_expt_1000_bf_scaffold_5623_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13125..13757
DNA (633bp) protein (211aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KMM3_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EWY39415.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_expt_1000_bf_scaffold_5623_19
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13829..14755
DNA (927bp) protein (309aa)
Dihydrodipicolinate synthetase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3U915_ADVKW rbh
dihydrodipicolinate synthetase rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_5623_20
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14763..15950
DNA (1188bp) protein (396aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
UPI0003CDEAA0 related cluster n=1 Tax=unknown RepID=UPI0003CDEAA0
uncharacterized Fe-S protein
SCNpilot_expt_1000_bf_scaffold_5623_21
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15947..16804
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037C4A2D rbh
Epimerase {ECO:0000313|EMBL:AHB47626.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_5623_22
unknown

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16983..17225
DNA (243bp) protein (81aa)

This feature has no annotations

Displaying 22 items

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