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SCNpilot_expt_1000_bf_scaffold_5788

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5788_1
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1175)
DNA (1173bp) protein (391aa)
Putative regulatory protein, possibly two-component response regulator n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYE8_9RHOB
Putative regulatory protein, possibly two-component response regulator {ECO:0000313|EMBL:EAV42144.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5788_2
unknown

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comp(1805..2050)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5788_3
unknown

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comp(2161..2454)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5788_4
unknown

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comp(2486..2725)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5788_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(3114..4280)
DNA (1167bp) protein (389aa)
Alpha-methylacyl-CoA racemase id=2961502 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_5788_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(4313..5596)
DNA (1284bp) protein (428aa)
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Pseudomonas sp. GM49 RepID=J2S835_9PSED rbh
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_expt_1000_bf_scaffold_5788_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5651..6571)
DNA (921bp) protein (307aa)
DNA-binding transcriptional activator GcvA n=1 Tax=Oceanibaculum indicum P24 RepID=K2JRN5_9PROT
transcriptional Regulator, LysR family
DNA-binding transcriptional activator GcvA {ECO:0000313|EMBL:EKE78093.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_1000_bf_scaffold_5788_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6666..8015)
DNA (1350bp) protein (450aa)
Type I secretion membrane fusion protein, HlyD n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BA40_9RHIZ rbh
type I secretion membrane fusion protein, HlyD rbh
Type I secretion membrane fusion protein, HlyD {ECO:0000313|EMBL:AGK59122.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5788_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8035..9912)
DNA (1878bp) protein (626aa)
Type I secretion system ATPase, PrtD n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7Y1_9RHIZ rbh
type I secretion system ATPase, PrtD rbh
Type I secretion system ATPase, PrtD {ECO:0000313|EMBL:AGK59123.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5788_10
unknown

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comp(9912..10442)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5788_11
unknown

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comp(10439..11311)
DNA (873bp) protein (291aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5788_12
Emiliania huxleyi virus 86, Coccolithovirus, Viruses

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11581..12588
DNA (1008bp) protein (336aa)
Putative membrane protein n=5 Tax=Coccolithovirus RepID=Q4A2B5_EHV8U
Putative membrane protein {ECO:0000313|EMBL:CAI65791.1}; TaxID=654925 species="Viruses; dsDNA viruses, no RNA stage; Phycodnaviridae; Coccolithovirus.;" source="Emiliania huxleyi virus 86 (isolate United Kingdom/English; Channel/1999) (EhV-86).;"
hypothetical protein
Displaying 12 items

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