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SCNpilot_expt_1000_bf_scaffold_13383

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13383_1
bacterium YEK0313, Bacteria

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comp(75..590)
DNA (516bp) protein (172aa)
Uncharacterized domain 1 n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AJT6_COLFT
Thioesterase superfamily protein {ECO:0000313|EMBL:CEJ15613.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13383_2
bacterium YEK0313, Bacteria

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comp(642..1040)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037D0E19
HTH-type transcriptional regulator SarZ {ECO:0000313|EMBL:CEJ14348.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_13383_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1178..1624)
DNA (447bp) protein (149aa)
UPI0003D644C7 related cluster n=1 Tax=unknown RepID=UPI0003D644C7
Membrane protein {ECO:0000313|EMBL:KFD25877.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein; K07340 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13383_4
unknown

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comp(1611..2066)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000372761F
Uncharacterized protein {ECO:0000313|EMBL:CPR19758.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein; K07340 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13383_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2191..2862)
DNA (672bp) protein (224aa)
Putative protease, membrane anchored n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD93_HYPSM
ybbK; protease, membrane anchored
Putative protease, membrane anchored {ECO:0000313|EMBL:CCB63970.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_13383_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2865..3170)
DNA (306bp) protein (102aa)
Membrane protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE28_9RHIZ
Membrane protein {ECO:0000313|EMBL:AHB48778.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ybbK; protease, membrane anchored
SCNpilot_expt_1000_bf_scaffold_13383_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3389..4312)
DNA (924bp) protein (308aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1]
Ferrochelatase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFN3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_13383_8
unknown

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comp(4535..5914)
DNA (1380bp) protein (460aa)
ATPase AAA n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035EF054 rbh
Nitrogen assimilation regulatory protein NtrX {ECO:0000313|EMBL:CPR21597.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Fis family two component sigma-54 specific transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_13383_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5940..8246)
DNA (2307bp) protein (769aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361082E rbh
multi-sensor signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_13383_10
unknown

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comp(8621..8986)
DNA (366bp) protein (122aa)
chemotaxis protein CheY n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037A5DDC
Fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator sigma54 interaction protein {ECO:0000313|EMBL:CPR21592.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
Displaying 10 items

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