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SCNpilot_expt_1000_bf_scaffold_13733

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13733_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(231..1151)
DNA (921bp) protein (307aa)
Polysaccharide deacetylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFR3_9RHIZ
Polysaccharide deacetylase {ECO:0000313|EMBL:AHB49368.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_13733_2
unknown

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comp(1515..2486)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000360221E rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CPR21070.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
alpha/beta hydrolase fold protein rbh
SCNpilot_expt_1000_bf_scaffold_13733_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2511..3596)
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
3-isopropylmalate dehydrogenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370F1E2 rbh
SCNpilot_expt_1000_bf_scaffold_13733_4
unknown

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comp(3715..3972)
DNA (258bp) protein (86aa)
Inositol monophosphatase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFL8_9RHIZ
Inositol monophosphatase {ECO:0000313|EMBL:CPR15008.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_13733_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4246..4440)
DNA (195bp) protein (65aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
4-hydroxybenzoate polyprenyl transferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCD6_9RHOB
SCNpilot_expt_1000_bf_scaffold_13733_6
unknown

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comp(4413..5258)
DNA (846bp) protein (282aa)
4-hydroxybenzoate polyprenyl transferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate polyprenyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGF3_9RHIZ rbh
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:CPR15012.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_13733_7
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5255..10549)
DNA (5295bp) protein (1765aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13] rbh
ATP-dependent helicase HrpB n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I5I5_RHOVT rbh
ATP-dependent helicase HrpB {ECO:0000313|EMBL:ADP72796.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_13733_8
unknown

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comp(11077..11940)
DNA (864bp) protein (288aa)
Haloacid dehalogenase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHE7_9RHIZ rbh
Haloacid dehalogenase {ECO:0000313|EMBL:CPR19462.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
HAD-superfamily hydrolase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_13733_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12238..12675
DNA (438bp) protein (146aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYM3_HYPDA
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ADJ23475.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 9 items

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