ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4122

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4122_1
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34..438)
DNA (405bp) protein (135aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FE4DDF
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KGT78141.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_1000_bf_scaffold_4122_2
unknown

Not on your lists

783..1220
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4122_3
uncultured alpha proteobacterium HF0130_20P23, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1423..1944
DNA (522bp) protein (174aa)
Transcriptional regulators n=1 Tax=uncultured alpha proteobacterium HF0130_20P23 RepID=E0XT89_9PROT
Transcriptional regulators {ECO:0000313|EMBL:ADI17630.1}; TaxID=710809 species="Bacteria; Proteobacteria; Alphaproteobacteria; environmental samples.;" source="uncultured alpha proteobacterium HF0130_20P23.;"
putative MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4122_4
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1947..3035
DNA (1089bp) protein (363aa)
Putative efflux pump protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIT9_9PROT rbh
Putative efflux pump protein {ECO:0000313|EMBL:EDP66570.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
secretion protein HlyD; K03543 multidrug resistance protein A
SCNpilot_expt_1000_bf_scaffold_4122_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3036..4115)
DNA (1080bp) protein (360aa)
UPI0003CFBFD7 related cluster n=1 Tax=unknown RepID=UPI0003CFBFD7
transcriptional regulator, MerR family
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_4122_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4466..5347)
DNA (882bp) protein (294aa)
rhodanese; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Putative thiosulfate sulfurtransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSR0_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_4122_7
unknown

Not on your lists

5476..6267
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036AA113 rbh
Uncharacterized protein {ECO:0000313|EMBL:CPR15367.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4122_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6274..6981
DNA (708bp) protein (236aa)
Molecular chaperone DnaJ n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHK0_9RHIZ
Molecular chaperone DnaJ {ECO:0000313|EMBL:AHB49419.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
heat shock protein DnaJ-like
SCNpilot_expt_1000_bf_scaffold_4122_9
unknown

Not on your lists

7202..7543
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037EC0A0
Uncharacterized protein {ECO:0000313|EMBL:CPR21788.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4122_10
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7622..8359
DNA (738bp) protein (246aa)
phosphatidylcholine synthase (EC:2.7.8.24); K01004 phosphatidylcholine synthase [EC:2.7.8.24]
Phosphatidylcholine synthase {ECO:0000256|PIRNR:PIRNR000851}; Short=PC synthase {ECO:0000256|PIRNR:PIRNR000851};; Short=PCS {ECO:0000256|PIRNR:PIRNR000851};; EC=2.7.8.24 {ECO:0000256|PIRNR:PIRNR000851};; CDP-diglyceride-choline O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000851}; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).
Phosphatidylcholine synthase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I632_RHOVT
SCNpilot_expt_1000_bf_scaffold_4122_11
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8648..9052
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUA9_HYPDA
hypothetical protein
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_4122_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9059..9466)
DNA (408bp) protein (136aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19)
Nucleotide pyrophosphohydrolase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFU8_9RHIZ
Nucleotide pyrophosphohydrolase {ECO:0000313|EMBL:AHB48814.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4122_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9906..10562)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQD2_HYPDA
hypothetical protein; K06966
Uncharacterized protein {ECO:0000313|EMBL:ADJ23886.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_4122_14
unknown

Not on your lists

10825..11739
DNA (915bp) protein (305aa)
Putative enzyme {ECO:0000313|EMBL:CPR21868.1}; EC=5.1.-.- {ECO:0000313|EMBL:CPR21868.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035EDE59 rbh
phenazine biosynthesis protein PhzF family; K06998 rbh
SCNpilot_expt_1000_bf_scaffold_4122_15
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12028..13674)
DNA (1647bp) protein (549aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] rbh
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:ADJ24350.1}; EC=5.4.99.2 {ECO:0000313|EMBL:ADJ24350.1};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Methylmalonyl-CoA mutase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSQ6_HYPDA rbh
SCNpilot_expt_1000_bf_scaffold_4122_16
unknown

Not on your lists

14010..15806
DNA (1797bp) protein (599aa)
GTP-binding protein TypA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9L7_9RHIZ rbh
GTP-binding protein {ECO:0000313|EMBL:CPR16650.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
GTP-binding protein TypA rbh
SCNpilot_expt_1000_bf_scaffold_4122_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16758..18032)
DNA (1275bp) protein (425aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41) rbh
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomic
Gamma-glutamyl phosphate reductase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZ50_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4122_18
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18049..19224)
DNA (1176bp) protein (392aa)
glutamate 5-kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] rbh
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Glutamate 5-kinase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQB0_HYPDA rbh
SCNpilot_expt_1000_bf_scaffold_4122_19
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19626..20522
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RPN5_9RHIZ
Transcriptional regulator, GntR family/amidohydrolase family protein {ECO:0000313|EMBL:ETW14097.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
transcriptional regulator, GntR family/amidohydrolase family protein
SCNpilot_expt_1000_bf_scaffold_4122_20
unknown

Not on your lists

20534..20989
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI00036E1E90
Predicted ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CPR14903.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_4122_21
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20989..21411
DNA (423bp) protein (141aa)
Methyltransferase type 12 n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B6U2_PARDP
methyltransferase type 12
Methyltransferase type 12 {ECO:0000313|EMBL:ABL71236.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Displaying 21 items

View Taxonomy