ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4209

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4209_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..492
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003612880
FAD-binding monooxygenase {ECO:0000313|EMBL:AHB49638.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
FAD-binding monooxygenase
SCNpilot_expt_1000_bf_scaffold_4209_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

512..1042
DNA (531bp) protein (177aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ppa; inorganic pyrophosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEM3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4209_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1069..2667)
DNA (1599bp) protein (533aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036B634D
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETR76115.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4209_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2859..4460)
DNA (1602bp) protein (534aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YC52_9BRAD
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETR76114.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
peptide ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4209_5
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4747..5106
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YJ91_9BRAD
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_4209_6
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5205..6029
DNA (825bp) protein (275aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368306A rbh
SCNpilot_expt_1000_bf_scaffold_4209_7
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6087..6707
DNA (621bp) protein (207aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha prote
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZZ9_RHOVT rbh
phosphoglycerate mutase rbh
SCNpilot_expt_1000_bf_scaffold_4209_8
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6619..7902)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4P5V8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ80630.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
monooxygenase, FAD-binding
SCNpilot_expt_1000_bf_scaffold_4209_9
unknown

Not on your lists

comp(7970..8479)
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXF5_HYPDA
Uncharacterized protein {ECO:0000313|EMBL:CPR16661.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4209_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8714..9889
DNA (1176bp) protein (392aa)
Putative acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EFH11704.1}; EC=2.3.1.- {ECO:0000313|EMBL:EFH11704.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Putative acetyl-CoA acetyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RLW8_9PROT rbh
SCNpilot_expt_1000_bf_scaffold_4209_11
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

9896..10288
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5P4_ALIDK
hypothetical protein; K07068
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
SCNpilot_expt_1000_bf_scaffold_4209_12
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10373..11359)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037CB54F rbh
Metal-dependent hydrolase, beta-lactamase superfamily II {ECO:0000313|EMBL:EIM30836.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
beta-lactamase domain-containing protein; K06897
SCNpilot_expt_1000_bf_scaffold_4209_13
unknown

Not on your lists

11776..12915
DNA (1140bp) protein (380aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DIM9_BRAJP
Putative branched-chain amino acid transport protein (ABC superfamily, peri_bind) {ECO:0000313|EMBL:CPR18429.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4209_14
unknown

Not on your lists

13214..13570
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4209_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13509..14843
DNA (1335bp) protein (445aa)
Inner-membrane translocator n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMX9_XANP2
Urea ABC transporter, permease UrtB {ECO:0000313|EMBL:KFC74338.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4209_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14840..15985
DNA (1146bp) protein (382aa)
Urea ABC transporter, permease protein UrtC n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VK38_RHOPX
Urea ABC transporter, permease protein UrtC {ECO:0000313|EMBL:KFC74339.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
urea ABC transporter permease UrtC; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4209_17
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15996..16775
DNA (780bp) protein (260aa)
Urea ABC transporter, ATPase protein UrtD n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHJ3_9RHOB
Urea ABC transporter, ATPase protein UrtD {ECO:0000313|EMBL:EJW13471.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4209_18
unknown

Not on your lists

17678..18169
DNA (492bp) protein (164aa)

This feature has no annotations

Displaying 18 items

View Taxonomy