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SCNpilot_expt_1000_bf_scaffold_4410

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4410_1
unknown

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3..818
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFY5_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:CPR21789.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4410_2
Brucella sp. NVSL 07-0026, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1071..1256)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036FBC62
Putative uncharacterized protein {ECO:0000313|EMBL:EFG38309.2}; TaxID=520448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. NVSL 07-0026.;"
hypothetical protein; K09937 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4410_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1253..2152)
DNA (900bp) protein (300aa)
hflC; HflC protein , modulator for HflB protease specific for phage lambda cII repressor; K04087 membrane protease subunit HflC [EC:3.4.-.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037338DE
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4410_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2155..3273)
DNA (1119bp) protein (373aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036ABB27 rbh
Membrane protein {ECO:0000313|EMBL:AHB49520.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4410_5
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3650..4912
DNA (1263bp) protein (421aa)
aspartate kinase; K00928 aspartate kinase [EC:2.7.2.4] rbh
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Aspartokinase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYB2_HYPDA rbh
SCNpilot_expt_1000_bf_scaffold_4410_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5176..6897
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003649D2B
Peptidase {ECO:0000313|EMBL:AHB47651.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
PTSINtr with GAF domain, PtsP
SCNpilot_expt_1000_bf_scaffold_4410_7
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6861..7460
DNA (600bp) protein (200aa)
protein PtsP; K08484 phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037DF257
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_4410_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7481..8278
DNA (798bp) protein (266aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:CCB66175.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CCB66175.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9V8_HYPSM
SCNpilot_expt_1000_bf_scaffold_4410_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8329..9432
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003663715
Uncharacterized protein {ECO:0000313|EMBL:AHB50425.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4410_10
unknown

Not on your lists

9429..9815
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003663715
Uncharacterized protein {ECO:0000313|EMBL:CPR14890.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_4410_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10049..12547
DNA (2499bp) protein (833aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000373416B rbh
histidine kinase HK, ATPase and Sensor Domain rbh
SCNpilot_expt_1000_bf_scaffold_4410_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12544..14055
DNA (1512bp) protein (504aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037C61D6 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB49726.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein; K07102 rbh
SCNpilot_expt_1000_bf_scaffold_4410_13
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14235..14753
DNA (519bp) protein (173aa)
Hemolysin A n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B341_9RHIZ
RNA binding methyltransferase FtsJ like {ECO:0000313|EMBL:BAQ16542.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hemolysin A
Displaying 13 items

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