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SCNpilot_expt_1000_bf_scaffold_4704

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4704_1
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..816
DNA (816bp) protein (272aa)
membrane dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19]
Membrane dipeptidase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDL9_XANP2
Peptidase M19 {ECO:0000313|EMBL:EWY36615.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_expt_1000_bf_scaffold_4704_2
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

898..1554
DNA (657bp) protein (219aa)
Blr1282 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89UX7_BRADU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC54710.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4704_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1814..2494
DNA (681bp) protein (227aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V858_9BRAD
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EFI51418.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Crp/Fnr family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4704_4
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2619..3572
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BHR1_OLICM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_4704_5
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3590..4174
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00036E8B41
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_4704_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4185..5699
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L190_METC4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_4704_7
unknown

Not on your lists

comp(5647..6369)
DNA (723bp) protein (241aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4704_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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6556..6729
DNA (174bp) protein (58aa)
qor1; quinone oxidoreductase Qor (EC:1.6.5.5)
Quinone oxidoreductase Qor n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=F8BVZ6_OLICO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_4704_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6748..7365
DNA (618bp) protein (206aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V855_9BRAD
mandelate racemase/muconate lactonizing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_4704_10
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7362..7685
DNA (324bp) protein (108aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V855_9BRAD
mandelate racemase/muconate lactonizing protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_4704_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7803..8270
DNA (468bp) protein (156aa)
glutamate mutase subunit S (EC:5.4.99.1); K01846 methylaspartate mutase [EC:5.4.99.1]
Methylaspartate mutase S chain n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QUW4_ACEAZ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_4704_12
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8283..9707
DNA (1425bp) protein (475aa)
hypothetical protein id=14625828 bin=bin7_NC10_sister species=Desulfosporosinus meridiei genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
glutamate mutase, MutL rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_expt_1000_bf_scaffold_4704_13
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9682..11178
DNA (1497bp) protein (499aa)
methylaspartate mutase subunit E (EC:5.4.99.1); K01846 methylaspartate mutase [EC:5.4.99.1] id=14625829 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methylaspartate mutase subunit E (EC:5.4.99.1)
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_4704_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11726..12655
DNA (930bp) protein (310aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3S1_RHOP2
ABC transporter; K02023 multiple sugar transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABD04889.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_4704_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12648..13382
DNA (735bp) protein (245aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3S2_RHOP2
binding-protein dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABD04888.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_4704_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13539..14372
DNA (834bp) protein (278aa)
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2K7X8_9PROT rbh
Binding-protein-dependent transport system inner membrane protein {ECO:0000313|EMBL:EKE79009.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
yesQ; binding-protein-dependent transport system inner membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_4704_17
Serratia sp. DD3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14408..15673
DNA (1266bp) protein (422aa)
Extracellular solute binding protein n=1 Tax=Serratia sp. DD3 RepID=V5CF62_9ENTR rbh
sn-glycerol-3-phosphate-binding periplasmic protein UgpB {ECO:0000313|EMBL:KEY57920.1}; TaxID=1410619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. DD3.;"
extracellular solute-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4704_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15745..16527
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000288823F
calcineurin-like phosphoesterase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_4704_19
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16760..17368
DNA (609bp) protein (203aa)
Glutathione S-transferase, N-terminal domain n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0LDX3_MAGSM
glutathione S-transferase domain-containing protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_4704_20
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17383..18564
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D9G1_BRAJP rbh
Aminotransferase class V {ECO:0000313|EMBL:KGT73974.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4704_21
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18580..18846)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037BE844
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:KGT75980.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
putative AraC family transcriptional regulator
Displaying 21 items

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