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SCNpilot_expt_1000_bf_scaffold_4992

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4992_1
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..179)
DNA (177bp) protein (59aa)
benzoyl-CoA oxygenase/reductase, BoxA protein; K15511 benzoyl-CoA 2,3-dioxygenase component A [EC:1.14.12.21]
Benzoyl-CoA oxygenase/reductase, BoxA protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WTR4_DELAC
Benzoyl-CoA oxygenase {ECO:0000313|EMBL:GAN75867.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_expt_1000_bf_scaffold_4992_2
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(176..505)
DNA (330bp) protein (110aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB34_ANADF
cupin
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_4992_3
unknown

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778..1098
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1149..2984
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9W0_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig176, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48645.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4992_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2981..3493
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003016F6B
Small GTP-binding protein {ECO:0000313|EMBL:CDX23649.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
small GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_4992_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3438..4634
DNA (1197bp) protein (399aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LWB7_METRJ
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_4992_7
unknown

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comp(4645..4932)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_8
unknown

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comp(5035..5274)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_9
unknown

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comp(5495..6160)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDL9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR21909.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_4992_10
unknown

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comp(6127..6300)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6598..7191
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SH48_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB49848.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_4992_12
CG_Alphaprot_01, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7809..9479
DNA (1671bp) protein (557aa)
major facilitator transporter n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002DD224A
sugar transport protein
Tax=CG_Alphaprot_01
SCNpilot_expt_1000_bf_scaffold_4992_13
unknown

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comp(9600..10085)
DNA (486bp) protein (162aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10277..10903)
DNA (627bp) protein (209aa)
Chemotaxis protein CheY n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI98_9RHIZ
Chemotaxis protein CheY {ECO:0000313|EMBL:AHB49669.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
fixJ; transcriptional regulator fixJ
SCNpilot_expt_1000_bf_scaffold_4992_15
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10900..11673)
DNA (774bp) protein (258aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
Two-component sensor histidine kinase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TRU4_PHAFV
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_4992_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11645..12568)
DNA (924bp) protein (308aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036CDC81
Integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_4992_17
unknown

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comp(12794..13060)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_18
bacterium YEK0313, Bacteria

Not on your lists

13542..15437
DNA (1896bp) protein (632aa)
ABC transporter domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7U7_HYPSM
Vitamin B12 transport ATP-binding protein BacA {ECO:0000313|EMBL:CEJ15491.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter; K02471 putative ATP-binding cassette transporter
SCNpilot_expt_1000_bf_scaffold_4992_19
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15475..16032)
DNA (558bp) protein (186aa)
petA; Ubiquinol-cytochrome C reductase, iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003626183
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_expt_1000_bf_scaffold_4992_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16058..16639)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00036473DE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_4992_21
unknown

Not on your lists

16963..17370
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4992_22
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17554..17868
DNA (315bp) protein (105aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Caulobacter crescentus OR37 RepID=R0EEQ0_CAUCE
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:ENZ83913.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
copR1; transcriptional activator protein CopR
SCNpilot_expt_1000_bf_scaffold_4992_23
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17904..18221
DNA (318bp) protein (106aa)
XRE family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B7AE01
cusR; transcriptional regulatory protein CusR
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:EBA01483.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
SCNpilot_expt_1000_bf_scaffold_4992_24
unknown

Not on your lists

18208..18516
DNA (309bp) protein (103aa)

This feature has no annotations

Displaying 24 items

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