ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7180

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7180_1
unknown

Not on your lists

2..616
DNA (615bp) protein (205aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7180_2
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(853..3543)
DNA (2691bp) protein (897aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3] rbh
Aconitate hydratase 1 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I4B0_RHOVT rbh
SCNpilot_expt_1000_bf_scaffold_7180_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3776..4729)
DNA (954bp) protein (318aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
rnd; ribonuclease D (RNase D); K03684 ribonuclease D [EC:3.1.13.5]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003737743 rbh
SCNpilot_expt_1000_bf_scaffold_7180_4
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5092..5541
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CHH9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR52060.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_expt_1000_bf_scaffold_7180_5
unknown

Not on your lists

comp(5477..5977)
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7180_6
unknown

Not on your lists

6342..7238
DNA (897bp) protein (299aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7180_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7387..7938
DNA (552bp) protein (184aa)
purM; phosphoribosylaminoimidazole synthetase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8C2_HYPSM
Displaying 7 items

View Taxonomy