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SCNpilot_expt_1000_bf_scaffold_6006

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6006_1
RLO_PLX_64_10, Bacteria

Not on your lists

comp(79..840)
DNA (762bp) protein (254aa)
2-dehydro-3-deoxyglucarate aldolase; K12660 2-dehydro-3-deoxy-L-rhamnonate aldolase [EC:4.1.2.-]
2-dehydro-3-deoxyglucarate aldolase n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7VQ11_PAETH
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
SCNpilot_expt_1000_bf_scaffold_6006_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(873..2990)
DNA (2118bp) protein (706aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368439E
SCNpilot_expt_1000_bf_scaffold_6006_3
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3798..4691)
DNA (894bp) protein (298aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TMD4_9RHIZ
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:ESR26898.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4824..6059
DNA (1236bp) protein (412aa)
redicted acyl-CoA transferases/carnitine dehydratase (EC:2.8.3.16)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003661B94
Uncharacterized protein {ECO:0000313|EMBL:KJC55048.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_expt_1000_bf_scaffold_6006_5
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6063..6548
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S723_9BURK
Dehydratase {ECO:0000313|EMBL:KDP87878.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
dehydratase
SCNpilot_expt_1000_bf_scaffold_6006_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6888..7496)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000377C56A
GCN5 family N-acetyltransferase {ECO:0000313|EMBL:AHB48339.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
GNAT family acetyltransferase; K09181 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_7
unknown

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7762..9345
DNA (1584bp) protein (528aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6006_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9543..11210)
DNA (1668bp) protein (556aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036F4FFA rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB48325.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
aminoglycoside phosphotransferase; K07028 rbh
SCNpilot_expt_1000_bf_scaffold_6006_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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11316..12176
DNA (861bp) protein (287aa)
MaoC-like dehydratase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZ06_9PROT rbh
MaoC-like dehydratase {ECO:0000313|EMBL:EDP62567.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
acyl dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_6006_10
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12249..12725)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4ZJ77_THASP
hypothetical protein
Bacterial sensory transduction regulator family protein {ECO:0000313|EMBL:KIN89793.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
SCNpilot_expt_1000_bf_scaffold_6006_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13007..13780
DNA (774bp) protein (258aa)
FAD dependent oxidoreductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIS7_9PROT
Cyclohexanone monooxygenase {ECO:0000313|EMBL:ETR78797.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_6006_12
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14316..14804
DNA (489bp) protein (163aa)
Cyclohexanone monooxygenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D437_BRAJP
Cyclohexanone monooxygenase {ECO:0000313|EMBL:EJZ32800.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
cyclohexanone monooxygenase
SCNpilot_expt_1000_bf_scaffold_6006_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14852..15451)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLC9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50348.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6006_14
unknown

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comp(15602..19771)
DNA (4170bp) protein (1390aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003735A49 rbh
Alpha-2-macroglobulin domain protein {ECO:0000313|EMBL:CPR17633.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
alpha-2-macroglobulin rbh
SCNpilot_expt_1000_bf_scaffold_6006_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19723..20790)
DNA (1068bp) protein (356aa)
Alpha-2-macroglobulin n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA24_9RHIZ
Alpha-2-macroglobulin {ECO:0000313|EMBL:AHB47488.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
alpha-2-macroglobulin; K06894
SCNpilot_expt_1000_bf_scaffold_6006_16
Shewanella sp. HN-41, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21801..22703
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Shewanella sp. HN-41 RepID=F7RLP0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGM70788.1}; TaxID=327275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. HN-41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_17
unknown

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22940..23695
DNA (756bp) protein (252aa)
Glutathione S-transferase domain-containing protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0GEI7_9BURK
Glutathione S-transferase-like protein {ECO:0000313|EMBL:CPR16585.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
glutathione S-transferase
SCNpilot_expt_1000_bf_scaffold_6006_18
unknown

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23773..25356
DNA (1584bp) protein (528aa)
Ffh, signal recognition particle protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAI9_9RHIZ rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
SCNpilot_expt_1000_bf_scaffold_6006_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25360..25866
DNA (507bp) protein (169aa)
Acetyltransferase, GNAT family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LNF8_RUEPO
HAE1 family hydrophobic/amphiphilic exporter-1 (Mainly G-bacteria) {ECO:0000313|EMBL:KFC73974.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_6006_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26272..26823
DNA (552bp) protein (184aa)
Ribosome maturation factor RimM n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JE04_HYPSM
rimM; ribosome maturation factor rimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6006_21
unknown

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27008..27592
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003707286
Uncharacterized protein {ECO:0000313|EMBL:CPR21475.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6006_22
unknown

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27635..29536
DNA (1902bp) protein (634aa)
ABC transporter n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BER3_9RHIZ
Holdfast attachment protein C {ECO:0000313|EMBL:CPR18395.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_6006_23
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29927..31123
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000362DFE2
Uncharacterized protein {ECO:0000313|EMBL:AHB50163.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
Displaying 23 items

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