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SCNpilot_expt_1000_bf_scaffold_6082

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6082_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..504
DNA (504bp) protein (168aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
3-hydroxy-3-methylglutaryl-CoA lyase n=1 Tax=Cupriavidus sp. WS RepID=UPI0003722AFC
3-hydroxy-3-methylglutaryl-CoA lyase {ECO:0000313|EMBL:KJB96518.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_6082_2
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

522..1703
DNA (1182bp) protein (394aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Ahrensia sp. R2A130 RepID=E0MTQ2_9RHOB rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:EFL87539.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
acyl-CoA dehydrogenase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_6082_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1728..2651
DNA (924bp) protein (308aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TNA6_9PROT rbh
SCNpilot_expt_1000_bf_scaffold_6082_4
unknown

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2682..2999
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6082_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3011..4249
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000370391F rbh
Phosphonoacetate hydrolase {ECO:0000313|EMBL:KJC61327.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
phosphonoacetate hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_6082_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4281..5033)
DNA (753bp) protein (251aa)
Thiaminase II {ECO:0000313|EMBL:CDM24192.1}; EC=3.5.99.2 {ECO:0000313|EMBL:CDM24192.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
transcriptional activator TenA; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] rbh
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI000373D80E rbh
SCNpilot_expt_1000_bf_scaffold_6082_7
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5140..6204
DNA (1065bp) protein (355aa)
Bll8057 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BU1_BRADU
hypothetical protein
Bll8057 protein {ECO:0000313|EMBL:BAC53322.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_expt_1000_bf_scaffold_6082_8
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6298..7056)
DNA (759bp) protein (253aa)
Porin n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESG9_METSB
porin
Porin {ECO:0000313|EMBL:ACK49859.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_6082_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7445..8227)
DNA (783bp) protein (261aa)
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
3-hydroxybutyrate dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D02AB rbh
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:CCM76774.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_expt_1000_bf_scaffold_6082_10
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8562..9296)
DNA (735bp) protein (245aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
UPI0003CDD779 related cluster n=1 Tax=unknown RepID=UPI0003CDD779 rbh
carbonic anhydrase rbh
SCNpilot_expt_1000_bf_scaffold_6082_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9516..9953)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037223DB
Preprotein translocase subunit TatC {ECO:0000313|EMBL:AHB48371.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
truncated hemoglobin-like protein
SCNpilot_expt_1000_bf_scaffold_6082_12
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9984..10439)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035F4B60
Uncharacterized protein {ECO:0000313|EMBL:AKH98804.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6082_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10441..10773)
DNA (333bp) protein (111aa)
4Fe-4S ferredoxin n=1 Tax=Rhizobium loti RepID=UPI000361731B
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; K05524 ferredoxin
Ferredoxin {ECO:0000313|EMBL:AHB47817.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_6082_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10783..11238)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B883_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56270.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6082_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11342..11788
DNA (447bp) protein (149aa)
Rrf2 family transcriptional regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE94_9RHIZ
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:AHB48370.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
nsrR; HTH-type transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_6082_16
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11814..12677)
DNA (864bp) protein (288aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI000370540E rbh
LysR family transcriptional regulator HdfR {ECO:0000313|EMBL:BAQ16592.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
HTH-type transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_6082_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12860..14467
DNA (1608bp) protein (536aa)
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:CDX39933.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDX39933.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ctaD; Cytochrome c oxidase subunit 1; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSY2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6082_18
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14501..15136
DNA (636bp) protein (212aa)
Transporter, Tim44 family protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FVB2_PELBH
Transporter, Tim44 family protein {ECO:0000313|EMBL:EAU48214.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
import inner membrane translocase subunit Tim44
SCNpilot_expt_1000_bf_scaffold_6082_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15180..15614)
DNA (435bp) protein (145aa)
Transcriptional regulator n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZ02_AZOBR
PAS sensor protein {ECO:0000313|EMBL:ETR75616.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator
Displaying 19 items

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