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SCNpilot_expt_1000_bf_scaffold_6507

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6507_1
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..821
DNA (819bp) protein (273aa)
Inner-membrane translocator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A167_STAND
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADH89425.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_6507_2
unknown

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827..2263
DNA (1437bp) protein (479aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000307E8FF
Leucine/isoleucine/valine transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CPR21380.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_6507_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2263..3171
DNA (909bp) protein (303aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Xanthobacteraceae RepID=UPI00037351EC
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADH89427.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_6507_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3168..3905
DNA (738bp) protein (246aa)
amino acid ABC transporter ATPase n=1 Tax=Kaistia granuli RepID=UPI0003753C40
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM25657.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6507_5
unknown

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3924..4280
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNW6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR21372.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6507_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4457..5572
DNA (1116bp) protein (372aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNW7_9RHIZ
Extracellular ligand-binding receptor {ECO:0000313|EMBL:KFC67645.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6507_7
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5583..6401
DNA (819bp) protein (273aa)
ABC transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000375F5F5
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACY17875.1}; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
SCNpilot_expt_1000_bf_scaffold_6507_8
unknown

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6415..6684
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_9
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6751..7008)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQS8_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ06602.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_6507_10
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7192..7551)
DNA (360bp) protein (120aa)
Putative response regulator receiver protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y4J3_9PROT
Putative response regulator receiver protein {ECO:0000313|EMBL:EGX99562.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_expt_1000_bf_scaffold_6507_11
unknown

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7945..8223
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_12
unknown

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8644..8853
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_13
unknown

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8857..9051
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6507_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9224..10459)
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003693C1C
Uncharacterized protein {ECO:0000313|EMBL:KFG67913.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
periplasmic serine protease, DO/DeqQ family
SCNpilot_expt_1000_bf_scaffold_6507_15
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10975..11880)
DNA (906bp) protein (302aa)
Transcriptional regulator LysR family putative n=1 Tax=Burkholderia sp. RPE64 RepID=R4X4Y9_9BURK
transcriptional regulator LysR family putative
Transcriptional regulator LysR family putative {ECO:0000313|EMBL:BAN27722.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
SCNpilot_expt_1000_bf_scaffold_6507_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12034..12843
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E7608D
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADH87851.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying 16 items

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