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SCNpilot_expt_1000_bf_scaffold_6898

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6898_1
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..444
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YQ56_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR04189.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6898_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(448..846)
DNA (399bp) protein (133aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] id=14625236 bin=bin7_NC10_sister species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
carboxymuconolactone decarboxylase (EC:4.1.1.44); K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
SCNpilot_expt_1000_bf_scaffold_6898_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(876..1805)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00030F5767
luciferase family protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_6898_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1805..1984)
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00030F5767
luciferase family protein
Luciferase family protein {ECO:0000313|EMBL:ABQ68038.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_6898_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2136..3302
DNA (1167bp) protein (389aa)
L-fuculose-phosphate aldolase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HMT1_9BRAD rbh
NADH:flavin oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_6898_6
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3370..5055)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IAK3_9BRAD
peptidase S8/S53 subtilisin kexin sedolisin
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_expt_1000_bf_scaffold_6898_7
unknown

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comp(5140..5754)
DNA (615bp) protein (205aa)
Chaperonin GroES n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H7Z5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CPR22231.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6898_8
bacterium YEK0313, Bacteria

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comp(5751..6314)
DNA (564bp) protein (188aa)
RNA polymerase sigma factor n=1 Tax=Bradyrhizobium elkanii RepID=UPI000308F9B2
ECF RNA polymerase sigma factor SigL {ECO:0000313|EMBL:CEJ10446.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_6898_9
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6543..6863)
DNA (321bp) protein (107aa)
Candidate transporter n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0Y2_RAMTT
transporter; K11741 quaternary ammonium compound-resistance protein SugE
Candidate transporter {ECO:0000313|EMBL:AEG92200.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_6898_10
unknown

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comp(6976..7896)
DNA (921bp) protein (307aa)
Putative Glucokinase {ECO:0000313|EMBL:CPR15512.1}; EC=2.7.1.2 {ECO:0000313|EMBL:CPR15512.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
glucokinase (glucose kinase) (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
glucokinase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000348BB95
SCNpilot_expt_1000_bf_scaffold_6898_11
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7893..9281)
DNA (1389bp) protein (463aa)
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] rbh
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I2S1_RHOVT rbh
SCNpilot_expt_1000_bf_scaffold_6898_12
unknown

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comp(9278..11086)
DNA (1809bp) protein (603aa)
Glycoside hydrolase 15-related protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11I51_MESSB rbh
Glycoside hydrolase 15-related protein {ECO:0000313|EMBL:CPR15509.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
glycoside hydrolase 15-related rbh
SCNpilot_expt_1000_bf_scaffold_6898_13
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11079..11834)
DNA (756bp) protein (252aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
trehalose-phosphatase (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
Trehalose-phosphatase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I2S3_RHOVT
SCNpilot_expt_1000_bf_scaffold_6898_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12246..13319
DNA (1074bp) protein (358aa)
PfkB domain-containing protein; K00852 ribokinase [EC:2.7.1.15] rbh
Ribokinase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PJG8_9RHOB rbh
Ribokinase {ECO:0000313|EMBL:EJW11082.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_expt_1000_bf_scaffold_6898_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13332..14585)
DNA (1254bp) protein (418aa)
pyridoxal-dependent decarboxylase; K01634 sphinganine-1-phosphate aldolase [EC:4.1.2.27] rbh
Pyridoxal-dependent decarboxylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR96_PARL1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETW93343.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Displaying 15 items

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