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SCNpilot_expt_1000_bf_scaffold_1044_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1044_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..219
DNA (219bp) protein (73aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBF1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38079.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1044_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289..1371
DNA (1083bp) protein (361aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine tRNA ribosyltransferase n=1 Tax=Afipia birgiae RepID=UPI000382A211
SCNpilot_expt_1000_bf_scaffold_1044_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1368..2501
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P658_9BRAD
SCNpilot_expt_1000_bf_scaffold_1044_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2505..2717)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000308698A
Uncharacterized protein {ECO:0000313|EMBL:EGP07636.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2946..3920
DNA (975bp) protein (325aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
cysK; O-acetylserine sulfhydrolase A (EC:2.5.1.47); K01738 cysteine synthase A [EC:2.5.1.47]
Cysteine synthase A n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCN8_9BRAD
SCNpilot_expt_1000_bf_scaffold_1044_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3923..4165
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FDFB3B
Uncharacterized protein {ECO:0000313|EMBL:EKS38075.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4168..5094)
DNA (927bp) protein (309aa)
Glycine/betaine/sarcosine/D-proline reductase family selenoprotein B n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBE3_9BRAD
Glycine/betaine/sarcosine/D-proline reductase family selenoprotein B {ECO:0000313|EMBL:EKS38074.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5206..5376
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PI74_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38073.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1044_curated_9
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5522..6202)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00034B5CEB
Uncharacterized protein {ECO:0000313|EMBL:EJL84930.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
TPR domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_10
unknown

Not on your lists

7146..7289
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1044_curated_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7341..10001)
DNA (2661bp) protein (887aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PPZ0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40418.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10195..10800)
DNA (606bp) protein (202aa)
beta-1-3, beta-1-6-glucan biosynthesis protein n=1 Tax=Afipia birgiae RepID=UPI00036975CD
Uncharacterized protein {ECO:0000313|EMBL:EGP07644.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10851..12614
DNA (1764bp) protein (588aa)
beta-(1-6) glucans synthase n=1 Tax=Afipia birgiae RepID=UPI000308185C
Uncharacterized protein {ECO:0000313|EMBL:EKS40420.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative beta (1-6) glucans synthase
SCNpilot_expt_1000_bf_scaffold_1044_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12574..12954)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P960_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38066.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13028..14209)
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D57FE2
Uncharacterized protein {ECO:0000313|EMBL:EKS38065.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_16
unknown

Not on your lists

comp(14206..14331)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1044_curated_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14378..15685
DNA (1308bp) protein (436aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
Bifunctional protein GlmU n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMT4_9BRAD
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1044_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15978..17804
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glucosamine--fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMT6_9BRAD
SCNpilot_expt_1000_bf_scaffold_1044_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17928..18701
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P643_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38062.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18801..19613
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PFV4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40426.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_1044_curated_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19625..21739)
DNA (2115bp) protein (705aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EGP07443.1}; EC=3.6.1.- {ECO:0000313|EMBL:EGP07443.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
recG; ATP-dependent DNA helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
ATP-dependent DNA helicase RecG n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMU0_9BRAD
SCNpilot_expt_1000_bf_scaffold_1044_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21804..22175
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003723029
Uncharacterized protein {ECO:0000313|EMBL:EKS38060.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K09159 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22172..25687
DNA (3516bp) protein (1172aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBC6_9BRAD
SCNpilot_expt_1000_bf_scaffold_1044_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25881..26270)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PI62_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38058.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
PRC-barrel protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26486..27724)
DNA (1239bp) protein (413aa)
signal peptide protein n=1 Tax=Afipia birgiae RepID=UPI0003162DB5
Uncharacterized protein {ECO:0000313|EMBL:EKS40431.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1044_curated_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27810..29039)
DNA (1230bp) protein (410aa)
acid-CoA ligase (EC:6.3.2.-); K01932 [EC:6.3.2.-] rbh
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCR9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40432.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Displaying 26 items

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