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SCNpilot_expt_1000_bf_scaffold_2865_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2865_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..495
DNA (495bp) protein (165aa)
cytochrome C oxidase assembly protein n=1 Tax=Afipia birgiae RepID=UPI000373DD7E
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
cytochrome C oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11
SCNpilot_expt_1000_bf_scaffold_2865_curated_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

556..1413
DNA (858bp) protein (286aa)
Cytochrome c oxidase polypeptide III {ECO:0000313|EMBL:EGP09159.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EGP09159.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
coxC; cytochrome C oxidase subunit III (EC:1.9.3.1); K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase polypeptide III n=2 Tax=Bradyrhizobiaceae RepID=F7QHV6_9BRAD
SCNpilot_expt_1000_bf_scaffold_2865_curated_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1486..1878
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NY11_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33369.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2865_curated_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1928..2704
DNA (777bp) protein (259aa)
Cytochrome oxidase biogenesis protein n=2 Tax=Bradyrhizobiaceae RepID=F7QHV8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33370.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
surfeit locus 1 family protein
SCNpilot_expt_1000_bf_scaffold_2865_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2839..4257
DNA (1419bp) protein (473aa)
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYM7_9BRAD
Threonine synthase {ECO:0000313|EMBL:EKS34281.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4254..5543
DNA (1290bp) protein (430aa)
mpp; mitochondrial processing peptidase-like protein; K01422 [EC:3.4.99.-] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3P5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34280.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5707..6234
DNA (528bp) protein (176aa)
N-acetyltransferase GCN5; K03790 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7D1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34278.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6328..6999
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHW3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09166.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
lipoprotein
SCNpilot_expt_1000_bf_scaffold_2865_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7265..7747)
DNA (483bp) protein (161aa)
H+-transporting two-sector ATPase, B/B' subunit; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYM2_9BRAD
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7753..8310)
DNA (558bp) protein (186aa)
H+transporting two-sector ATPase subunit B/B'; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3P1_9BRAD
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8377..8604)
DNA (228bp) protein (76aa)
hypothetical protein (EC:3.6.3.14); K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATPase, F0/V0 complex subunit C n=4 Tax=Bradyrhizobiaceae RepID=B6JDC9_OLICO
Lipid-binding protein {ECO:0000313|EMBL:CEG09531.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8656..9405)
DNA (750bp) protein (250aa)
atpB; ATP synthase subunit a; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7C8_9BRAD
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2865_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9547..9927)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D43700
Uncharacterized protein {ECO:0000313|EMBL:EKS34272.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K02116 ATP synthase protein I
SCNpilot_expt_1000_bf_scaffold_2865_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10206..10400
DNA (195bp) protein (65aa)
DSBA oxidoreductase n=1 Tax=Afipia birgiae RepID=UPI0002DC9CF8
Uncharacterized protein {ECO:0000313|EMBL:EKS34271.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2865_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10397..10828
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYL8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34271.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2865_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10898..11440
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3N7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34270.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2865_curated_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11532..13193)
DNA (1662bp) protein (554aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P4N5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09174.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
general substrate transporter
SCNpilot_expt_1000_bf_scaffold_2865_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13472..14149
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7C2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34268.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
tcsR; two-component response regulator
SCNpilot_expt_1000_bf_scaffold_2865_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14264..14899
DNA (636bp) protein (212aa)
HAD family hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002E4C11D
Epoxide hydrolase domain-like phosphatase {ECO:0000313|EMBL:EKS34267.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
epoxide hydrolase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_1000_bf_scaffold_2865_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14901..17072)
DNA (2172bp) protein (724aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYL4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34266.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
two-component hybrid sensor histidine kinase and response regulator
SCNpilot_expt_1000_bf_scaffold_2865_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17011..18363)
DNA (1353bp) protein (451aa)
histidine kinase n=1 Tax=Afipia birgiae RepID=UPI0002F89B4A
Uncharacterized protein {ECO:0000313|EMBL:EKS34266.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Na-dependent permease
SCNpilot_expt_1000_bf_scaffold_2865_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18560..19201
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3N3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34265.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2865_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19216..20445)
DNA (1230bp) protein (410aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hemA; 5-aminolevulinate synthase (EC:2.3.1.37); K00643 5-aminolevulinate synthase [EC:2.3.1.37]
5-aminolevulinate synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0M2_9BRAD
SCNpilot_expt_1000_bf_scaffold_2865_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20622..21686)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7B8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34263.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2865_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21818..22888)
DNA (1071bp) protein (357aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NVE1_9BRAD
SCNpilot_expt_1000_bf_scaffold_2865_curated_26
unknown

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24479..24889
DNA (411bp) protein (137aa)

This feature has no annotations

Displaying 26 items

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