ggKbase home page

SCNpilot_expt_1000_bf_scaffold_10089_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10089_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..295)
DNA (294bp) protein (98aa)
Phage phi-C31 major capsid gp36-like protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J7Z2_9RHIZ
Strain MEJ076 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ01939.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
gp36; phage phi-C31 major capsid gp36-like protein
SCNpilot_expt_1000_bf_scaffold_10089_curated_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(310..1026)
DNA (717bp) protein (239aa)
Primosome assembly protein PriA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDU8_9RHIZ
Primosome assembly protein PriA {ECO:0000313|EMBL:AHB49046.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
phage prohead protease HK97 family; K06904
SCNpilot_expt_1000_bf_scaffold_10089_curated_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1071..1466)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003665FCB
Phage portal protein {ECO:0000313|EMBL:BAQ18010.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Phage portal protein, HK97
SCNpilot_expt_1000_bf_scaffold_10089_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2301..2600)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370502D
Uncharacterized protein {ECO:0000313|EMBL:AHB49048.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10089_curated_5
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3059..3739
DNA (681bp) protein (227aa)
Strain SA-120 Contig367, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01427.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
SCNpilot_expt_1000_bf_scaffold_10089_curated_6
unknown

Not on your lists

comp(3585..4205)
DNA (621bp) protein (207aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10089_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4600..5169
DNA (570bp) protein (190aa)
TadE family protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JQY6_HYPDA
TadE family protein
TadE family protein {ECO:0000313|EMBL:ADJ22138.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_10089_curated_8
unknown

Not on your lists

comp(5058..5474)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10089_curated_9
unknown

Not on your lists

5561..5791
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10089_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5872..6354)
DNA (483bp) protein (161aa)
30S ribosomal protein S9 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LR80_9RHIZ
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_expt_1000_bf_scaffold_10089_curated_11
unknown

Not on your lists


comp(6359..6820)
DNA (462bp) protein (154aa)
50S ribosomal protein L13 n=3 Tax=Rhizobium radiobacter RepID=G6XNI5_RHIRD
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
SCNpilot_expt_1000_bf_scaffold_10089_curated_12
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7139..7498)
DNA (360bp) protein (120aa)
Thioesterase superfamily protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1Q3_RHOVT
Phenylacetic acid degradation protein {ECO:0000313|EMBL:KAI94204.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
thioesterase
SCNpilot_expt_1000_bf_scaffold_10089_curated_13
unknown

Not on your lists

7721..8257
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NW95_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CPR20695.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10089_curated_14
unknown

Not on your lists

8307..9137
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036176F8
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:CPR20698.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_10089_curated_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9324..9551
DNA (228bp) protein (76aa)
Putative glyoxalase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILV8_AZOC5
glyoxalase; K07032
Putative glyoxalase {ECO:0000313|EMBL:BAF86425.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_10089_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9548..9748
DNA (201bp) protein (67aa)
CoA-binding domain protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HYY3_RHOVT
CoA-binding protein; K06929
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 16 items

View Taxonomy