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SCNpilot_expt_1000_bf_scaffold_5402_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5402_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1429)
DNA (1428bp) protein (476aa)
Peptide ABC transporter substrate-binding protein n=1 Tax=Oceanibaculum indicum P24 IPR2_9PROT">RepID=K2IPR2_9PROT
Substrate-binding protein {ECO:0000313|EMBL:KFC66809.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5402_curated_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1992..3212
DNA (1221bp) protein (407aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
AMP-binding enzyme, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX75_9GAMM
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_expt_1000_bf_scaffold_5402_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3221..3517)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SJV1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB50365.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_5402_curated_4
unknown

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comp(3542..3868)
DNA (327bp) protein (109aa)
chorismate mutase; K04782 isochorismate pyruvate lyase [EC:4.2.99.21]
Chorismate mutase, type II n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHB4_HYPSM
Chorismate mutase, type II {ECO:0000313|EMBL:CPR15455.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5402_curated_5
Psychrobacter sp. JCM 18900, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3965..4348)
DNA (384bp) protein (128aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Carboxymuconolactone decarboxylase n=1 Tax=Marinomonas sp. (strain MWYL1) RepID=A6VY74_MARMS
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:GAF53564.1}; TaxID=1298608 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. JCM 18900.;"
SCNpilot_expt_1000_bf_scaffold_5402_curated_6
unknown

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4628..5788
DNA (1161bp) protein (387aa)
Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase) {ECO:0000313|EMBL:CPR18019.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CPR18019.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
phbA4; Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036B7BE9
SCNpilot_expt_1000_bf_scaffold_5402_curated_7
unknown

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comp(5722..6111)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5402_curated_8
unknown

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comp(6154..6396)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5402_curated_9
unknown

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comp(6541..6897)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5402_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7256..9262
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D7EB2
Uncharacterized protein {ECO:0000313|EMBL:AHB47617.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5402_curated_11
unknown

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comp(9296..9658)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5402_curated_12
unknown

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9922..10536
DNA (615bp) protein (205aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hisB; imidazoleglycerol phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JES2_HYPSM
SCNpilot_expt_1000_bf_scaffold_5402_curated_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10574..10789
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXG1_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ25142.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 13 items

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