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SCNpilot_expt_1000_bf_scaffold_7263_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7263_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..309)
DNA (309bp) protein (103aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
3-oxoacyl-(acyl carrier protein) synthase III (EC:2.3.1.180)
3-oxoacyl-ACP synthase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380B763
SCNpilot_expt_1000_bf_scaffold_7263_curated_2
unknown

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891..1115
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7263_curated_3
unknown

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1131..1298
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7263_curated_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1711..2787
DNA (1077bp) protein (359aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JS14_HYPDA
SCNpilot_expt_1000_bf_scaffold_7263_curated_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2841..3752
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D1CFC
metallophosphoesterase; K07098
Metallophosphoesterase {ECO:0000313|EMBL:ACL60355.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_7263_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3745..4215
DNA (471bp) protein (157aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JS12_HYPDA
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:ADJ24230.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_7263_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4499..5218
DNA (720bp) protein (240aa)
Protein TolQ n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BE68_9RHIZ
protein TolQ
Protein TolQ {ECO:0000313|EMBL:AGK58816.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_7263_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5246..5713
DNA (468bp) protein (156aa)
Biopolymer transporter ExbD n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SED5_9RHIZ
Biopolymer transporter ExbD {ECO:0000313|EMBL:AHB48415.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
SCNpilot_expt_1000_bf_scaffold_7263_curated_9
unknown

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comp(5786..5962)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7263_curated_10
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6096..6881
DNA (786bp) protein (262aa)
Protein TolA n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFS8_HYPSM
protein TolA; K03646 colicin import membrane protein
Protein TolA {ECO:0000313|EMBL:CCB64246.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_7263_curated_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7042..8250
DNA (1209bp) protein (403aa)
Pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:AHB49421.1}; EC=1.2.1.88 {ECO:0000313|EMBL:AHB49421.1};; EC=1.5.99.8 {ECO:0000313|EMBL:AHB49421.1};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
delta-1-pyrroline-5-carboxylate dehydrogenase; K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Pyrroline-5-carboxylate dehydrogenase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEX9_9RHIZ
Displaying 11 items

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