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SCNpilot_expt_1000_bf_scaffold_3753_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3753_curated_1

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comp(3..830)
DNA (828bp) protein (276aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA11566.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Hypothetical conserved protein id=3899696 bin=GWF2_Bacteroidetes_38_335 species=uncultured planctomycete genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
SCNpilot_expt_1000_bf_scaffold_3753_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1110..2081
DNA (972bp) protein (324aa)
sppA; peptidase; K04773 protease IV [EC:3.4.21.-]
Putative peptidase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAI8_HYPSM
Putative peptidase {ECO:0000313|EMBL:CCB63775.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_3
unknown

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2116..2403
DNA (288bp) protein (96aa)
Integration host factor subunit beta n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAI9_HYPSM
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2498..2866
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375FFD6
Membrane protein {ECO:0000313|EMBL:AHB49739.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3753_curated_5
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3042..3689
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WTL9_RHOS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP70733.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3767..4426
DNA (660bp) protein (220aa)
trpF; phosphoribosylanthranilate isomerase (EC:5.3.1.24); K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24]
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAJ1_HYPSM
SCNpilot_expt_1000_bf_scaffold_3753_curated_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4464..5702
DNA (1239bp) protein (413aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase subunit beta n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGW3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3753_curated_8
unknown

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5728..6174
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3753_curated_9
unknown

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6181..7020
DNA (840bp) protein (280aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
tryptophan synthase subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20]
Tryptophan synthase subunit alpha n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFR2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3753_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7224..7583
DNA (360bp) protein (120aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2]
Acetyl-CoA carboxylase subunit beta n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI62_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3753_curated_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7544..8284
DNA (741bp) protein (247aa)
acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JRP6_HYPDA
SCNpilot_expt_1000_bf_scaffold_3753_curated_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8366..9685
DNA (1320bp) protein (440aa)
folC; bifunctional folylpolyglutamate synthase and dihydrofolate synthase (EC:6.3.2.12 6.3.2.17); K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F9081
Folylpolyglutamate synthase {ECO:0000313|EMBL:AHB49734.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10459..10833
DNA (375bp) protein (125aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B667FD
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3753_curated_14
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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11039..12511
DNA (1473bp) protein (491aa)
Amidohydrolase (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2TEI4_9RHIZ
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_3753_curated_15
unknown

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comp(12766..13032)
DNA (267bp) protein (89aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3753_curated_16
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13463..13876
DNA (414bp) protein (138aa)
rkpK; UDP-glucose 6-dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003608C16
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KFG66582.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14004..14681
DNA (678bp) protein (226aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F63A62
Glutathione S-transferase {ECO:0000313|EMBL:KIZ41370.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_18
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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14695..15525
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NW03_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ETX00709.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3753_curated_19
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15529..16338)
DNA (810bp) protein (270aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
Probable L-aspartate dehydrogenase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U339_9PROT
SCNpilot_expt_1000_bf_scaffold_3753_curated_20
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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16500..17375
DNA (876bp) protein (292aa)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Frankia sp. CN3 RepID=G6H3T4_9ACTO
6-phosphogluconate dehydrogenase NAD-binding {ECO:0000313|EMBL:EFC84013.1}; Flags: Precursor;; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
NAD-binding 6-phosphogluconate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3753_curated_21
unknown

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17618..18109
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3753_curated_22
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18161..19120)
DNA (960bp) protein (320aa)
Putative permease n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I2I2_9BRAD
Putative permease {ECO:0000313|EMBL:EJN12998.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein; K07088
SCNpilot_expt_1000_bf_scaffold_3753_curated_23
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19308..21575)
DNA (2268bp) protein (756aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
glyS; glycine tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
Glycyl-tRNA synthetase subunit beta n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDI0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3753_curated_24
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21568..22101)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q592_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ08699.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3753_curated_25
unknown

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comp(22134..22493)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3753_curated_26
unknown

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comp(22490..23155)
DNA (666bp) protein (222aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
glycyl-tRNA synthetase subunit alpha n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003818FC7
Displaying 26 items

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