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SCNpilot_expt_1000_bf_scaffold_3377_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3377_curated_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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2..766
DNA (765bp) protein (255aa)
Acetolactate synthase large subunit (EC:2.2.1.6)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037AC323
Putative acetolactate synthase large subunit {ECO:0000313|EMBL:EDP66859.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_3377_curated_2
unknown

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766..1338
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3377_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1348..4407)
DNA (3060bp) protein (1020aa)
Apolipoprotein A1/A4/E n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD85_9RHIZ
Apolipoprotein A1/A4/E {ECO:0000313|EMBL:AHB48826.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
apolipoprotein A1/A4/E
SCNpilot_expt_1000_bf_scaffold_3377_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4824..5303
DNA (480bp) protein (160aa)
Hpt protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW43_PARL1
Hpt protein
Hpt protein {ECO:0000313|EMBL:ABS64126.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_3377_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5410..6084
DNA (675bp) protein (225aa)
NUDIX hydrolase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEP4_9RHIZ
NUDIX hydrolase {ECO:0000313|EMBL:AHB48429.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_3377_curated_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6169..6450)
DNA (282bp) protein (94aa)
Translation initiation factor IF-1 n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCB7_9RHIZ
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
infA; translation initiation factor if-1 (infA); K02518 translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_3377_curated_7
unknown

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comp(6585..6791)
DNA (207bp) protein (69aa)
Cold-shock DNA-binding domain protein n=3 Tax=Hyphomicrobium RepID=D8JRF7_HYPDA
Major cold shock protein {ECO:0000313|EMBL:CPR19486.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_3377_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7063..7632)
DNA (570bp) protein (190aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="H
prs; phosphoribosylpyrophosphate synthetase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SIE5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3377_curated_9
unknown

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comp(8359..8574)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3377_curated_10
unknown

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comp(8608..8751)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 10 items

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