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SCNpilot_expt_1000_bf_scaffold_1391_curated

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1391_curated_1
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1828)
DNA (1827bp) protein (609aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NNW8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ77651.1}; TaxID=1282361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC402.;"
putative methyl-accepting chemotaxis receptor; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1391_curated_2
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2220..2852
DNA (633bp) protein (211aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RKA0_9RHIZ
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ESR25754.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
ftrB; transcriptional activator FtrB; K13642 CRP/FNR family transcriptional regulator, transcriptional activator FtrB
SCNpilot_expt_1000_bf_scaffold_1391_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3440..4462)
DNA (1023bp) protein (341aa)
Putative alkanal monooxygenase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HZ86_AZOC5
alkanal monooxygenase
Putative alkanal monooxygenase {ECO:0000313|EMBL:BAF90551.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_1391_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4652..5101)
DNA (450bp) protein (150aa)
GCN5-related N-acetyltransferase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TR03_TISMK
Acetyltransferase {ECO:0000313|EMBL:KFC75282.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_1391_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5252..5737)
DNA (486bp) protein (162aa)
Redoxin domain protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IHL7_METNO
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Malallergen {ECO:0000313|EMBL:KFC75281.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
redoxin domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1391_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5789..6652)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036CF085
Uncharacterized protein {ECO:0000313|EMBL:KFC75280.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1391_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6841..7452
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B3B13C
UPF0301 protein FG93_00298 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07735 putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1391_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7477..10383)
DNA (2907bp) protein (969aa)
diguanylate cyclase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003150205
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain protein {ECO:0000313|EMBL:KFC75278.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_1391_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10494..11093)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003129394
Putative ribosomal-protein-alanine N-acetyltransferase (RimJ-like) {ECO:0000313|EMBL:KFC75277.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1391_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11100..12431)
DNA (1332bp) protein (444aa)
Putative Zn-dependent peptidase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPY8_9RHIZ
Putative Zn-dependent peptidase {ECO:0000313|EMBL:KFC75276.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
processing peptidase
SCNpilot_expt_1000_bf_scaffold_1391_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12428..13843)
DNA (1416bp) protein (472aa)
Threonine synthase {ECO:0000313|EMBL:KFC75275.1}; EC=4.2.3.1 {ECO:0000313|EMBL:KFC75275.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
Threonine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPY9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1391_curated_12
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13944..14705)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035C9370
surfeit locus 1 family protein
Surfeit locus 1 family protein {ECO:0000313|EMBL:ACK50219.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_1391_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14702..15076)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QUM4_METTR
Uncharacterized protein {ECO:0000313|EMBL:KFC75274.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cytochrome c oxidase subunit III
SCNpilot_expt_1000_bf_scaffold_1391_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15153..16016)
DNA (864bp) protein (288aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
cytochrome B562 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F8D097
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:KFC75273.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1391_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16070..16681)
DNA (612bp) protein (204aa)
Cytochrome c oxidase assembly protein CtaG n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPZ4_9RHIZ
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cytochrome c oxidase assembly protein CtaG/Cox11; K02258 cytochrome c oxidase assembly protein subunit 11
SCNpilot_expt_1000_bf_scaffold_1391_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16681..16854)
DNA (174bp) protein (58aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC75271.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1391_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16851..17798)
DNA (948bp) protein (316aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030D4CBC
SCNpilot_expt_1000_bf_scaffold_1391_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17950..19581)
DNA (1632bp) protein (544aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase subunit I n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000366AB65
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:KFC75269.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1391_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19674..20552)
DNA (879bp) protein (293aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cytochrome C oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A497_STAND
SCNpilot_expt_1000_bf_scaffold_1391_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20904..21413
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D89A33
Chaperonin GroEL {ECO:0000313|EMBL:KFC75267.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
invasion associated locus B family protein
SCNpilot_expt_1000_bf_scaffold_1391_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21410..22015
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IS18_METNO
Putative lipoprotein {ECO:0000313|EMBL:KFC75266.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1391_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22398..23561
DNA (1164bp) protein (388aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycine cleavage system T protein; K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ02_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1391_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23597..23971
DNA (375bp) protein (125aa)
Glycine cleavage system H protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ03_9RHIZ
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_1391_curated_24
unknown

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24087..24185
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 24 items

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