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SCNpilot_expt_1000_bf_scaffold_484_curated

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Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_484_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(506..3013)
DNA (2508bp) protein (836aa)
Rhomboid family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7W8_RHOVT
Molybdate transport system ATP-binding protein {ECO:0000313|EMBL:KFC64666.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rhomboid family protein
SCNpilot_expt_1000_bf_scaffold_484_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3261..3659)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F3D06
Uncharacterized protein {ECO:0000313|EMBL:KFC74782.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3652..5292)
DNA (1641bp) protein (547aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDS8_BEII9
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_484_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5274..5978)
DNA (705bp) protein (235aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDS9_BEII9
Two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like protein {ECO:0000313|EMBL:KFC74784.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_484_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5978..7558)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THU2_MESCW
Uncharacterized protein {ECO:0000313|EMBL:KFC74785.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7994..9100
DNA (1107bp) protein (369aa)
Phage shock protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCS5_9RHIZ
Phage shock protein A PspA family protein {ECO:0000313|EMBL:EYR83004.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phage shock protein A, PspA
SCNpilot_expt_1000_bf_scaffold_484_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9100..9735
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI0003764B56
Uncharacterized protein {ECO:0000313|EMBL:EYR83003.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9755..11452
DNA (1698bp) protein (566aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00035F9938
Band 7 protein {ECO:0000313|EMBL:EYR83002.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07192 flotillin
SCNpilot_expt_1000_bf_scaffold_484_curated_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11882..12577)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EN09_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49144.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_484_curated_10
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12574..14457)
DNA (1884bp) protein (628aa)
Heavy metal translocating P-type ATPase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IQ58_XANP2
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABS70154.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_484_curated_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14768..16186)
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037787BC
Ferric reductase {ECO:0000313|EMBL:KGD96922.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
ferric reductase transmembrane domain-containing protein
SCNpilot_expt_1000_bf_scaffold_484_curated_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16183..17160)
DNA (978bp) protein (326aa)
ApbE-like lipoprotein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3H3_POLGS
Thiamine biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:KJB90309.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ApbE-like lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_expt_1000_bf_scaffold_484_curated_13
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17192..19402)
DNA (2211bp) protein (737aa)
oxidoreductase FAD-binding subunit; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
hypothetical protein n=1 Tax=Halomonas jeotgali RepID=UPI0003465F85
Uncharacterized protein {ECO:0000313|EMBL:KJB90001.1}; Flags: Fragment;; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_484_curated_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19426..19896)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6KV00_9BACT
Tat pathway signal protein {ECO:0000313|EMBL:KJB90000.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Tat (Twin-arginine translocation) pathway signal sequence domain-containing protein
SCNpilot_expt_1000_bf_scaffold_484_curated_15
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20085..20489)
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6KUZ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KEP67791.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_16
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20566..21315
DNA (750bp) protein (250aa)
DNA-binding response regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT1_OLICO
Transcriptional regulator {ECO:0000313|EMBL:EZQ14952.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
DNA-binding response regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_484_curated_17
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21312..22640
DNA (1329bp) protein (443aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
sensor histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
Uncharacterized protein n=1 Tax=Brucella abortus F2/06-8 RepID=N7FKC3_BRUAO
SCNpilot_expt_1000_bf_scaffold_484_curated_18
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23140..24030
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000375F801
AMP-ligase {ECO:0000313|EMBL:EAP77227.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_484_curated_19
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24712..26547)
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CHG7_METED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX23251.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_expt_1000_bf_scaffold_484_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26544..27605)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07NW6_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06368.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_484_curated_21
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27613..29763)
DNA (2151bp) protein (717aa)
Transposase-like Mu n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8A9_STAND
transposase-like Mu
Transposase-like Mu {ECO:0000313|EMBL:ADH88582.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_484_curated_22
unknown

Not on your lists

comp(29763..30143)
DNA (381bp) protein (127aa)
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_23
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32622..33725
DNA (1104bp) protein (368aa)
HAD-superfamily hydrolase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FAV9_9BURK
HAD-superfamily hydrolase {ECO:0000313|EMBL:EHK64627.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
HAD-superfamily hydrolase
SCNpilot_expt_1000_bf_scaffold_484_curated_24
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33777..34571
DNA (795bp) protein (265aa)
Metallophosphoesterase n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B4R6_METEA
Metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACS43448.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_expt_1000_bf_scaffold_484_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34636..36006)
DNA (1371bp) protein (457aa)
Permeases of the major facilitator superfamily n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CIR4_9RHIZ
Putative NreB protein {ECO:0000313|EMBL:KFC64629.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Permeases of the major facilitator superfamily
SCNpilot_expt_1000_bf_scaffold_484_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36072..36350)
DNA (279bp) protein (93aa)
UPI0003CE59A7 related cluster n=1 Tax=unknown RepID=UPI0003CE59A7
Uncharacterized protein {ECO:0000313|EMBL:KFC64627.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07807 hypothetical protein NreA
SCNpilot_expt_1000_bf_scaffold_484_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36516..36839
DNA (324bp) protein (108aa)
UPI0003CF154C related cluster n=1 Tax=unknown RepID=UPI0003CF154C
Uncharacterized protein {ECO:0000313|EMBL:KFC64626.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_484_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36891..37616
DNA (726bp) protein (242aa)
UPI0003CE80E0 related cluster n=1 Tax=unknown RepID=UPI0003CE80E0
Hydrogenase/urease accessory protein {ECO:0000313|EMBL:KFC64625.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37628..38308
DNA (681bp) protein (227aa)
UPI0003CE77B5 related cluster n=1 Tax=unknown RepID=UPI0003CE77B5
Uncharacterized protein {ECO:0000313|EMBL:KFC64624.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_484_curated_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38665..39561
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMC7_XANP2
Phosphonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDR86836.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
phosphate/phosphonate ABC transporter; K02044 phosphonate transport system substrate-binding protein
Displaying items 1-30 of 40 in total

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