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SCNpilot_expt_1000_bf_scaffold_395_curated

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Displaying items 1-30 of 125 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_395_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(480..1181)
DNA (702bp) protein (234aa)
Dimethylmenaquinone methyltransferase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B9Q7_RHILS
hypothetical protein
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:ACS60929.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_395_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1390..2061)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7TB21_ALCXX
AroM protein {ECO:0000313|EMBL:KFC70535.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K14591 protein AroM
SCNpilot_expt_1000_bf_scaffold_395_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2125..3798)
DNA (1674bp) protein (558aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z3H8_9RHIZ
OPT oligopeptide transporter protein {ECO:0000313|EMBL:KFC70534.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oligopeptide transporter OPT superfamily protein
SCNpilot_expt_1000_bf_scaffold_395_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3853..7701)
DNA (3849bp) protein (1283aa)
Hydantoin utilization protein A {ECO:0000313|EMBL:KFC70533.1}; EC=3.5.2.14 {ECO:0000313|EMBL:KFC70533.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
N-methylhydantoinase A (EC:3.5.2.9); K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9]
Hydantoinase/oxoprolinase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXJ9_9PROT
SCNpilot_expt_1000_bf_scaffold_395_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7698..8483)
DNA (786bp) protein (262aa)
IclR helix-turn-helix protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXK0_9PROT
Transcriptional regulator {ECO:0000313|EMBL:KFC70532.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_395_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8941..9549)
DNA (609bp) protein (203aa)
Transcriptional regulator, luxR family n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UHU4_RHIRD
Transcriptional regulator, luxR family {ECO:0000313|EMBL:EGP54163.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_395_curated_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9735..10517)
DNA (783bp) protein (261aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P286_AZOS1
transcriptional regulator; K03710 GntR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAI74906.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_395_curated_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10568..11536
DNA (969bp) protein (323aa)
Ribokinase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P287_AZOS1
ribokinase
Ribokinase {ECO:0000313|EMBL:BAI74907.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_395_curated_9
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11635..12771
DNA (1137bp) protein (379aa)
Transcriptional regulator, LuxR family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EQ47_BRASB
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABQ38291.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_1000_bf_scaffold_395_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12888..14009)
DNA (1122bp) protein (374aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
anmK; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM26_9RHIZ
SCNpilot_expt_1000_bf_scaffold_395_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14033..14341)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIS1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC75546.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_395_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14345..14632)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BI46_9RHIZ
Type IV secretion system protein VirB3 {ECO:0000313|EMBL:KFC75547.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_395_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14671..15378)
DNA (708bp) protein (236aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=PYRF_RHOP5 rbh
SCNpilot_expt_1000_bf_scaffold_395_curated_14
unknown

Not on your lists

15411..16148
DNA (738bp) protein (246aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_395_curated_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16182..16946
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL67_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG68262.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
putative integral membrane protein
SCNpilot_expt_1000_bf_scaffold_395_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16961..17623)
DNA (663bp) protein (221aa)
DSBA oxidoreductase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IPS4_METNO
DSBA oxidoreductase {ECO:0000313|EMBL:KFC75551.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_395_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17695..18762)
DNA (1068bp) protein (356aa)
L-lysine 2,3-aminomutase (KAM) (LAM) {ECO:0000313|EMBL:KFC75552.1}; EC=5.4.3.2 {ECO:0000313|EMBL:KFC75552.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lysine 2,3-aminomutase YodO family protein; K01843 lysine 2,3-aminomutase [EC:5.4.3.2]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E7778A
SCNpilot_expt_1000_bf_scaffold_395_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18759..19823)
DNA (1065bp) protein (355aa)
Putative lysyl-tRNA synthetase (Lysine--tRNA ligase) {ECO:0000313|EMBL:KFC75553.1}; EC=6.1.1.6 {ECO:0000313|EMBL:KFC75553.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lysine--tRNA ligase; K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJ98_METS4
SCNpilot_expt_1000_bf_scaffold_395_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20003..20572
DNA (570bp) protein (190aa)
elongation factor P n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310860C
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
translation elongation factor P; K02356 elongation factor P
SCNpilot_expt_1000_bf_scaffold_395_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20663..21181
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPA8_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KFC75555.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09983 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_395_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21198..21677
DNA (480bp) protein (160aa)
GCN5-related N-acetyltransferase n=2 Tax=Streptomyces RepID=E8WEA3_STRFA
Putative GCN5-related N-acetyltransferase (GNAT) {ECO:0000313|EMBL:KFC75556.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GCN5-related N-acetyltransferase
SCNpilot_expt_1000_bf_scaffold_395_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21973..22626)
DNA (654bp) protein (218aa)
Putative enzyme with metallo-hydrolase/oxidoreductase domain (YcbL-like) n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J0I9_POLGS
Putative enzyme with metallo-hydrolase/oxidoreductase domain (YcbL-like) {ECO:0000313|EMBL:KFC75558.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_395_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22665..22991)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CCV6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC75559.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_395_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22988..24604)
DNA (1617bp) protein (539aa)
fumB; fumarate hydratase, class I (EC:4.2.1.2); K01676 fumarate hydratase, class I [EC:4.2.1.2]
fumarate hydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031B301F
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type {ECO:0000313|EMBL:KFC75560.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_395_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24781..25254)
DNA (474bp) protein (158aa)
Nitrogen regulatory protein PtsN {ECO:0000313|EMBL:KFC75561.1}; EC=2.7.1.- {ECO:0000313|EMBL:KFC75561.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FDDD11
SCNpilot_expt_1000_bf_scaffold_395_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25328..25954)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D93963
SSU ribosomal protein S30P / sigma 54 modulation protein {ECO:0000313|EMBL:KFC75562.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ribosomal subunit interface protein
SCNpilot_expt_1000_bf_scaffold_395_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26091..27620)
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FEA7C5
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor
SCNpilot_expt_1000_bf_scaffold_395_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27784..28665)
DNA (882bp) protein (294aa)
Putative ABC transporter (ATP-binding protein) {ECO:0000313|EMBL:KFC75564.1}; EC=3.6.3.- {ECO:0000313|EMBL:KFC75564.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00035E9AFE
SCNpilot_expt_1000_bf_scaffold_395_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28691..29404)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ91_9RHIZ
Lipopolysaccharide transport periplasmic protein LptA {ECO:0000313|EMBL:KFC75565.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_1000_bf_scaffold_395_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29406..30176)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ90_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC75566.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Displaying items 1-30 of 125 in total

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