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SCNpilot_expt_1000_bf_scaffold_280_curated

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_280_curated_1
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

392..1255
DNA (864bp) protein (288aa)
ABC-type polysaccharide/polyol phosphate export systems, permease component n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XEE5_9RALS
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
ABC transporter membrane protein; K09690 lipopolysaccharide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_280_curated_2
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1360..2493
DNA (1134bp) protein (378aa)
Teichoic-acid-transporting AtPase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XD05_9RALS
Phosphate ABC transporter ATPase {ECO:0000313|EMBL:EYS96937.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
ABC transporter-like protein; K09691 lipopolysaccharide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_280_curated_3
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2490..3566
DNA (1077bp) protein (359aa)
FkbM family methyltransferase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XD38_9RALS
FkbM family methyltransferase {ECO:0000313|EMBL:EYS96938.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
transferase
SCNpilot_expt_1000_bf_scaffold_280_curated_4
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3568..4425
DNA (858bp) protein (286aa)
alpha-1,2-fucosyltransferase (EC:2.4.1.-)
Glycosyl transferase family protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EFA5_9BURK
Glycosyl transferase family protein {ECO:0000313|EMBL:EOA04526.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
SCNpilot_expt_1000_bf_scaffold_280_curated_5
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4485..6308
DNA (1824bp) protein (608aa)
Glycosyl transferase family 2 n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WVJ4_METML
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACT47943.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
SCNpilot_expt_1000_bf_scaffold_280_curated_6
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6402..7310
DNA (909bp) protein (303aa)
Chloramphenicol O-acetyltransferase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G6W5_9BURK
Chloramphenicol O-acetyltransferase {ECO:0000313|EMBL:EOA04527.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
hexapeptide repeat-containing transferase
SCNpilot_expt_1000_bf_scaffold_280_curated_7
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7248..8324)
DNA (1077bp) protein (359aa)
Family 2 glycosyl transferase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XD33_9RALS
Family 2 glycosyl transferase {ECO:0000313|EMBL:EYS96941.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
family 2 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_280_curated_8
Methylotenera mobilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8371..9255)
DNA (885bp) protein (295aa)
Methyltransferase type 12 n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WVJ2_METML
type 12 methyltransferase
Methyltransferase type 12 {ECO:0000313|EMBL:ACT47941.1}; TaxID=583345 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540).;"
SCNpilot_expt_1000_bf_scaffold_280_curated_9
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9252..10436)
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036D008F
Pyridoxamine 5-phosphate oxidase {ECO:0000313|EMBL:KGJ08892.1}; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
DegT/DnrJ/EryC1/StrS aminotransferase
SCNpilot_expt_1000_bf_scaffold_280_curated_10
R_Alphaproteobacteria_46_13, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10442..11383)
DNA (942bp) protein (314aa)
GDP-L-fucose synthase (EC:1.1.1.271); K02377 GDP-L-fucose synthase [EC:1.1.1.271]
GDP-L-fucose synthase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SNG9_9RHOB
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_46_13_curated
SCNpilot_expt_1000_bf_scaffold_280_curated_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11380..11916)
DNA (537bp) protein (179aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
GDP-mannose 4,6-dehydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036B1B61
SCNpilot_expt_1000_bf_scaffold_280_curated_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12853..13734
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036230E7
wxocBC; putative glycosyltransferase, fusion protein
Putative glycosyltransferase, fusion protein {ECO:0000313|EMBL:CAQ44207.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
SCNpilot_expt_1000_bf_scaffold_280_curated_13
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13885..14178)
DNA (294bp) protein (98aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KMA8_SOLCM
glucose-1-phosphate thymidylyltransferase
SCNpilot_expt_1000_bf_scaffold_280_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14183..15076)
DNA (894bp) protein (298aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:KFC64973.1}; EC=1.1.1.133 {ECO:0000313|EMBL:KFC64973.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Methylocystis parvus RepID=UPI00030B1D1C
SCNpilot_expt_1000_bf_scaffold_280_curated_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15076..15633)
DNA (558bp) protein (186aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Methylocystis parvus RepID=UPI0002DB012A
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EIM26167.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_280_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15651..16706)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZT8_RHOP2
SCNpilot_expt_1000_bf_scaffold_280_curated_17
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16838..17740)
DNA (903bp) protein (301aa)
rhamnosyltransferase; K12990 rhamnosyltransferase [EC:2.4.1.-]
Rhamnosyltransferase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M5I2_METRJ
Rhamnosyltransferase {ECO:0000313|EMBL:ACB23573.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_280_curated_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18094..19443
DNA (1350bp) protein (450aa)
nucleotide sugar dehydrogenase; K13015 UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.-]
Nucleotide sugar dehydrogenase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UD06_METS4
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EZQ13307.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_280_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19745..20407)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D0B09
Putative phosphoesterase, ICC {ECO:0000313|EMBL:KFC75507.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
metallophosphoesterase; K06953
SCNpilot_expt_1000_bf_scaffold_280_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20449..22935)
DNA (2487bp) protein (829aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036DB94F
DEAD/H associated domain protein {ECO:0000313|EMBL:KFC75506.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_280_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23169..24128)
DNA (960bp) protein (320aa)
Putative methyltransferase (Contains TPR repeat) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXP1_9RHIZ
Putative methyltransferase (Contains TPR repeat) {ECO:0000313|EMBL:KFC75505.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
type 12 methyltransferase
SCNpilot_expt_1000_bf_scaffold_280_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24152..25222
DNA (1071bp) protein (357aa)
Putative mRNA 3-end processing factor n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INK6_METNO
Putative metallo-hydrolase/oxidoreductase {ECO:0000313|EMBL:KFC75504.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
SCNpilot_expt_1000_bf_scaffold_280_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25227..25997)
DNA (771bp) protein (257aa)
Lysophospholipase L1-like esterase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSL3_9RHIZ
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:KFC75503.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
G-D-S-L family lipolytic protein
SCNpilot_expt_1000_bf_scaffold_280_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26111..27748
DNA (1638bp) protein (546aa)
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXP3_9RHIZ
ATP dependent DNA ligase {ECO:0000313|EMBL:KFC75502.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_280_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27854..28534
DNA (681bp) protein (227aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A003_STAND
Putative two-component transcriptional regulator, LuxR family {ECO:0000313|EMBL:KFC75501.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_280_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28704..28958
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000379C78A
Aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A {ECO:0000313|EMBL:KFC75499.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_280_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28969..30057)
DNA (1089bp) protein (363aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydroorotate dehydrogenase 2 (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=PYRD_METNO rbh
SCNpilot_expt_1000_bf_scaffold_280_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30130..30471)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ID12_METNO
Uncharacterized protein {ECO:0000313|EMBL:KFC75496.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_280_curated_29
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30638..31267
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035E4AEA
phage repressor
Putative phage repressor {ECO:0000313|EMBL:ADH87399.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_280_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31274..32731)
DNA (1458bp) protein (486aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Signal transduction histidine kinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUQ7_9RHIZ
histidine kinase
Displaying items 1-30 of 109 in total

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