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SCNpilot_expt_1000_bf_scaffold_68_curated

Search features with annotation key words

Displaying items 1-30 of 675 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_68_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_68_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172..1065)
DNA (894bp) protein (298aa)
Phosphate ABC transporter, permease protein PstA n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU28_9RHIZ
Phosphate transport system permease protein 2 {ECO:0000313|EMBL:KFC70012.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphate ABC transporter permease; K02038 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_68_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1078..2055)
DNA (978bp) protein (326aa)
Phosphate ABC transporter permease n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X2I6_9RHIZ
Phosphate ABC transporter, inner membrane subunit PstC {ECO:0000313|EMBL:KFC70013.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphate ABC transporter permease; K02037 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_68_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2279..3304)
DNA (1026bp) protein (342aa)
Phosphate-binding protein PstS n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CUE0_9RHIZ
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_68_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3430..4464)
DNA (1035bp) protein (345aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FB2984
SCNpilot_expt_1000_bf_scaffold_68_curated_6
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4608..5567
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ICZ0_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96755.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_68_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5584..6870)
DNA (1287bp) protein (429aa)
TRAP dicarboxylate transporter subunit DctM n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT72_9RHIZ
TRAP dicarboxylate transporter subunit DctM {ECO:0000313|EMBL:EHK56071.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
siaT2; sialic acid TRAP transporter permease protein SiaT
SCNpilot_expt_1000_bf_scaffold_68_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6867..7379)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A5DA3
Putative TRAP-type C4-dicarboxylate transport system {ECO:0000313|EMBL:KFC66537.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_1000_bf_scaffold_68_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7596..8588)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003189B43
Uncharacterized protein {ECO:0000313|EMBL:KFC66538.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_68_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8697..9374)
DNA (678bp) protein (226aa)
GntR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT75_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KFC66539.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_68_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9399..10295)
DNA (897bp) protein (299aa)
dapA; dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F76C11
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:KFC66540.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_68_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10377..11195)
DNA (819bp) protein (273aa)
ABC transporter, permease protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A6Q6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFC66541.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_68_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11195..12124)
DNA (930bp) protein (310aa)
Permease component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYD9_9RHIZ
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:KFC66542.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_68_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12230..13567)
DNA (1338bp) protein (446aa)
ABC transporter, solute-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSN5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KFC66543.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter substrate-binding protein (sugar); K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_68_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13775..14680
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F102A6
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:KFC66545.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hydrolase; K07046
SCNpilot_expt_1000_bf_scaffold_68_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14765..15271
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T8C5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC65060.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_68_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15349..15609)
DNA (261bp) protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC65061.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_68_curated_18
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16546..18222)
DNA (1677bp) protein (559aa)
ATP-dependent endonuclease of the OLD family n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I7M0_GLUXN
Uncharacterized protein {ECO:0000313|EMBL:AHK72328.1}; TaxID=1288313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans DSM 3504.;"
ATP-dependent endonuclease
SCNpilot_expt_1000_bf_scaffold_68_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18439..19617
DNA (1179bp) protein (393aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00019609}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00019609};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
serC; phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] rbh
Phosphoserine aminotransferase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FX75_RHIML
SCNpilot_expt_1000_bf_scaffold_68_curated_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19841..21430
DNA (1590bp) protein (530aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTW2_9RHIZ
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KFC65054.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_68_curated_21
unknown

Not on your lists

21433..21687
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_68_curated_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21751..22752
DNA (1002bp) protein (334aa)
Beta-lactamase class A n=1 Tax=uncultured bacterium RepID=E4WMD6_9BACT
Putative beta-lactamase {ECO:0000313|EMBL:KFC65053.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
beta-lactamase class A
SCNpilot_expt_1000_bf_scaffold_68_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22760..23680)
DNA (921bp) protein (307aa)
Drug/metabolite transporter permease n=1 Tax=Oceanibaculum indicum P24 RepID=K2KEN3_9PROT
Putative transmembrane protein {ECO:0000313|EMBL:KFC74017.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_68_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23796..24677
DNA (882bp) protein (294aa)
Putative Glutamine amidotransferase, class-I {ECO:0000313|EMBL:KFC74018.1}; EC=6.3.5.2 {ECO:0000313|EMBL:KFC74018.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTW5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_68_curated_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24867..26585
DNA (1719bp) protein (573aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037E8F37
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:KFC74019.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_68_curated_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26608..27186)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037D06B5
Protein tyrosine phosphatase {ECO:0000313|EMBL:KDP72354.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
protein tyrosine phosphatase
SCNpilot_expt_1000_bf_scaffold_68_curated_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27306..28514)
DNA (1209bp) protein (403aa)
Putative Amidohydrolase family protein hippurate hydrolase (Benzoylglycine amidohydrolase) {ECO:0000313|EMBL:KFC66575.1}; EC=3.5.1.- {ECO:0000313|EMBL:KFC66575.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035EA004
hydrolase
SCNpilot_expt_1000_bf_scaffold_68_curated_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28822..30114
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
adenylosuccinate synthetase n=1 Tax=Methylobacterium sp. 88A RepID=UPI0003657930
SCNpilot_expt_1000_bf_scaffold_68_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30166..31425
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUE1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC74024.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_68_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31510..32457)
DNA (948bp) protein (316aa)
polyprenyl synthetase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F6B79A
Farnesyl diphosphate synthase {ECO:0000313|EMBL:KFC74034.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Displaying items 1-30 of 675 in total

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