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SCNpilot_expt_1000_bf_scaffold_1587_curated

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Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1587_curated_1
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..212)
DNA (210bp) protein (70aa)
Probable aldehyde dehydrogenase protein n=2 Tax=Rhizobium etli RepID=B3PW94_RHIE6
aldehyde dehydrogenase protein
Aldehyde dehydrogenase protein {ECO:0000313|EMBL:AGS22965.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_2
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(287..1282)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VLP0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ19831.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..2589)
DNA (1206bp) protein (402aa)
ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI0003757CFA
sugar ABC transporter permease; K10547 putative multiple sugar transport system permease protein
ABC transporter (Sugar), membrane spanning protein {ECO:0000313|EMBL:ACP26171.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_4
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2589..4175)
DNA (1587bp) protein (529aa)
xylose ABC transporter ATP-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00035EFEB8
araB; ABC transporter ATP-binding protein; K10548 putative multiple sugar transport system ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AEH83243.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4239..5309)
DNA (1071bp) protein (357aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QZU6_9RHIZ
ABC-type xylose transport system periplasmic component {ECO:0000313|EMBL:EYR83544.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sbpA; periplasmic substrate-binding protein; ABC transporter; K10546 putative multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5571..6575
DNA (1005bp) protein (335aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J812_AGRRK
gbpR; transcriptional regulator protein
Transcriptional regulator {ECO:0000313|EMBL:EJK87738.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6629..7075
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6ATU0_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS57432.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7319..7579)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKY7_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB72058.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_9
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8244..9095
DNA (852bp) protein (284aa)
Chaperone protein HchA n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFZ3_AGRSH
chaperone protein HchA; K05523 molecular chaperone HchA (Hsp31)
Chaperone protein HchA {ECO:0000313|EMBL:ADY67975.1}; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_10
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9092..9760
DNA (669bp) protein (223aa)
LuxR family transcriptional regulator n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IGV0_9BURK
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESJ12459.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1587_curated_11
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9814..10296
DNA (483bp) protein (161aa)
Short chain dehydrogenase n=1 Tax=Burkholderia cepacia GG4 RepID=J7J363_BURCE
Short-chain dehydrogenase {ECO:0000313|EMBL:KIC58942.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1587_curated_12
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10289..10597
DNA (309bp) protein (103aa)
Short chain dehydrogenase n=1 Tax=Burkholderia cepacia GG4 RepID=J7J363_BURCE
Short-chain dehydrogenase {ECO:0000313|EMBL:KIC58942.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1587_curated_13
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10599..11231
DNA (633bp) protein (211aa)
NAD-dependent dehydratase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036A527D
Uncharacterized protein {ECO:0000313|EMBL:EJO32222.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_14
Gluconobacter thailandicus, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11418..12059)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator n=2 Tax=Gluconobacter thailandicus RepID=M9MB38_GLUTH
TetR family transcriptional regulator {ECO:0000313|EMBL:GAC89152.1}; TaxID=1291534 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter thailandicus NBRC 3255.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1587_curated_15
Gluconobacter thailandicus, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12151..12900
DNA (750bp) protein (250aa)
FAD-binding 9 siderophore-interacting domain protein n=2 Tax=Gluconobacter thailandicus RepID=M9M869_GLUTH
FAD-binding 9 siderophore-interacting domain protein {ECO:0000313|EMBL:GAC89151.1}; TaxID=1291534 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter thailandicus NBRC 3255.;"
FAD-binding 9 siderophore-interacting domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_16
Gluconobacter thailandicus, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12914..14110
DNA (1197bp) protein (399aa)
Putative monooxygenase n=2 Tax=Gluconobacter thailandicus RepID=M9MKP1_GLUTH
Putative monooxygenase {ECO:0000313|EMBL:GAC89150.1}; TaxID=1291534 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter thailandicus NBRC 3255.;"
pyridine nucleotide-disulfide oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1587_curated_17
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14428..15264)
DNA (837bp) protein (279aa)
UPI0003CF5F0E related cluster n=1 Tax=unknown RepID=UPI0003CF5F0E
Oxidoreductase {ECO:0000313|EMBL:ESY81339.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1587_curated_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15298..15969)
DNA (672bp) protein (224aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase, N-domain protein n=2 Tax=Burkholderia multivorans RepID=B9BJQ2_9BURK
Glutathione S-transferase {ECO:0000313|EMBL:EWY37626.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_19
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16011..16688)
DNA (678bp) protein (226aa)
Alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FU97_RHIML
Uncharacterized protein {ECO:0000313|EMBL:EMS41125.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
SCNpilot_expt_1000_bf_scaffold_1587_curated_20
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16794..17690
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2S6_STAND
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADH91606.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17972..18214)
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138F1_RHOPS
hypothetical protein; K06997
Uncharacterized protein {ECO:0000313|EMBL:ABE39538.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_22
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18481..19245)
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VK67_CAUST
Putative oxidoreductase/Short-chain dehydrogenase {ECO:0000313|EMBL:KFC62023.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1587_curated_23
Pectobacterium wasabiae, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20232..20993)
DNA (762bp) protein (254aa)
short-chain dehydrogenase/reductase SDR; K14189 uncharacterized oxidoreductase [EC:1.-.-.-]
Dehydrogenase protein DltE n=1 Tax=Pectobacterium wasabiae CFBP 3304 RepID=J8THB6_9ENTR
Dehydrogenase protein DltE {ECO:0000313|EMBL:EJS95131.1}; TaxID=1175631 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium wasabiae CFBP 3304.;"
SCNpilot_expt_1000_bf_scaffold_1587_curated_24
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20990..21892)
DNA (903bp) protein (301aa)
NmrA family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A115_RHILW
NmrA family transcriptional regulator {ECO:0000313|EMBL:AJY48429.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
NmrA family protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_25
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22030..22983
DNA (954bp) protein (318aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WBV5_RHILT
AraC family transcriptional regulator {ECO:0000313|EMBL:AJY47681.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1587_curated_26
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23724..25508)
DNA (1785bp) protein (595aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0J7M7_9PSED
Putative uncharacterized protein {ECO:0000313|EMBL:EHK72911.1}; TaxID=1112217 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas psychrotolerans L19.;"
hypothetical protein; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_1587_curated_27
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26401..27003
DNA (603bp) protein (201aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3C7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHY59404.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transcriptional regulator, TetR family
SCNpilot_expt_1000_bf_scaffold_1587_curated_28
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26996..28144
DNA (1149bp) protein (383aa)
Putative membrane protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V158_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHY59405.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_29
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28399..29448)
DNA (1050bp) protein (350aa)
Resolvase domain n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP48_RHOPX
Resolvase {ECO:0000313|EMBL:GAJ29888.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
resolvase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1587_curated_30
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29505..29963)
DNA (459bp) protein (153aa)
Transposase n=3 Tax=Rhizobium RepID=Q3L277_RHITR
Transposase {ECO:0000313|EMBL:KGE79626.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
putative IS3 family transposase, IS51 group, OrfB
Displaying items 1-30 of 65 in total

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