ggKbase home page

SCNpilot_expt_1000_bf_scaffold_15982_curated

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15982_curated_1
unknown

Not on your lists

comp(3..116)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_15982_curated_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128..574)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2L174_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ93756.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15982_curated_3
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(612..980)
DNA (369bp) protein (123aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Burkholderia cepacia GG4 RepID=J7JC24_BURCE
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:KGJ01865.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
antibiotic biosynthesis monooxygenase
SCNpilot_expt_1000_bf_scaffold_15982_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1079..1555
DNA (477bp) protein (159aa)
MarR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F191
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AIC27185.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
putative transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_15982_curated_5
Mycobacterium fortuitum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1578..2156)
DNA (579bp) protein (193aa)
TetR family transcriptional regulator n=1 Tax=Mycobacterium fortuitum subsp. fortuitum DSM 46621 RepID=K0UXW5_MYCFO
TetR family transcriptional regulator {ECO:0000313|EMBL:EJZ11932.1}; TaxID=1214102 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium fortuitum subsp. fortuitum DSM 46621.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_15982_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2683..3471
DNA (789bp) protein (263aa)
Monooxygenase FAD-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GG99_ALIDK
monooxygenase FAD-binding protein
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:AEB83969.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_15982_curated_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3684..3905)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXB8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL26563.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15982_curated_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3908..5065)
DNA (1158bp) protein (386aa)
Conjugal transfer protein TrbI n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNM8_9SPHN
Conjugation TrbI family protein {ECO:0000313|EMBL:CDN94546.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
trbI2; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_15982_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5062..6045)
DNA (984bp) protein (328aa)
P-type conjugative transfer protein TrbG n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VP40_RHOPX
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:CDN94545.1}; Flags: Precursor;; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_expt_1000_bf_scaffold_15982_curated_10
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6042..6236)
DNA (195bp) protein (65aa)
conjugal transfer protein TrbF n=1 Tax=Paracoccus sp. N5 RepID=UPI00035C3536
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KGJ02986.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Displaying 10 items

View Taxonomy