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SCNpilot_expt_1000_bf_scaffold_7404_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7404_curated_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..900
DNA (900bp) protein (300aa)
Electron transfer flavoprotein alpha-subunit n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQB1_GRABC
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:KKB86007.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
SCNpilot_expt_1000_bf_scaffold_7404_curated_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

988..2151
DNA (1164bp) protein (388aa)
N-acetyl-L,L-diaminopimelate deacetylase; K01451 hippurate hydrolase [EC:3.5.1.32]
N-acetyl-L,L-diaminopimelate deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAA9_PELHB
Catalyzes the cleavage of p-aminobenzoyl-glutamat e to p-aminobenzoate and glutamate, subunit A {ECO:0000313|EMBL:CDP52756.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_7404_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2180..3238
DNA (1059bp) protein (353aa)
Putative ammonia monooxygenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAA8_PELHB
Bll1341 protein {ECO:0000313|EMBL:CDP52755.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
putative ammonia monooxygenase; K07120
SCNpilot_expt_1000_bf_scaffold_7404_curated_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3256..4899)
DNA (1644bp) protein (548aa)
maltodextrin glucosidase; K01187 alpha-glucosidase [EC:3.2.1.20]
Maltodextrin glucosidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAA4_PELHB
Alpha-glucosidase {ECO:0000313|EMBL:KFL27731.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_7404_curated_5
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5059..5814)
DNA (756bp) protein (252aa)
short-chain dehydrogenase n=1 Tax=Bacillus sp. 10403023 RepID=UPI0002880770
Putative dehydrogenase {ECO:0000313|EMBL:GAD34605.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
putative short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_7404_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5817..6746)
DNA (930bp) protein (310aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Rhizobium sp. CF080 RepID=J3AT82_9RHIZ
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KKB86000.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative glycerate dehydrogenase (GyaR-like protein)
SCNpilot_expt_1000_bf_scaffold_7404_curated_7
unknown

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comp(7504..7593)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7404_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8014..8340
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA99_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB85999.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8482..9459
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA98_PELHB
A alpha-helical domain with a conserved ER moti {ECO:0000313|EMBL:KKB85998.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_10
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9459..10262
DNA (804bp) protein (268aa)
Protein containing transglutaminase-like domain, putative cysteine protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA97_PELHB
Transglutaminase-like domain protein {ECO:0000313|EMBL:KFC68410.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
protein containing transglutaminase-like domain cysteine protease
SCNpilot_expt_1000_bf_scaffold_7404_curated_11
unknown

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10444..10674
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7404_curated_12
unknown

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10690..10830
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7404_curated_13
unknown

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10849..10977
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7404_curated_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11318..12808
DNA (1491bp) protein (497aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] rbh
UPI0003CEB132 related cluster n=1 Tax=unknown RepID=UPI0003CEB132
SCNpilot_expt_1000_bf_scaffold_7404_curated_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12818..13330)
DNA (513bp) protein (171aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBQ9_PELHB
Putative membrane protein {ECO:0000313|EMBL:CDP53174.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13355..14773)
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
integral membrane sensor signal transduction histidine kinase; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
Two-component sensor histidine kinase transcriptional regulatory protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJX3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7404_curated_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14773..15405)
DNA (633bp) protein (211aa)
Transcriptional regulatory protein QseB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRS3_9RHIZ
Tricarboxylate transport transcriptional regulator TctD {ECO:0000313|EMBL:CDP49898.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
two-component response regulator protein; K02483 two-component system, OmpR family, response regulator
SCNpilot_expt_1000_bf_scaffold_7404_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15493..16554
DNA (1062bp) protein (354aa)
Iron ABC transporter substrate-binding protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B108_RHIRD
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:EMS96751.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
iron ABC transporter substrate-binding protein; K02012 iron(III) transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_19
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17498..17644
DNA (147bp) protein (49aa)
TRAP-T family transporter periplasmic binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I7H3_9RHIZ
C4-dicarboxylate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB82539.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein; K07795 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_20
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17652..18167
DNA (516bp) protein (172aa)
Uncharacterized protein n=8 Tax=Rhizobium meliloti RepID=K0PEA4_RHIML
Tricarboxylate transport protein TctB {ECO:0000313|EMBL:KIV67553.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_21
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18164..19681
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QR76_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF57497.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19678..19956)
DNA (279bp) protein (93aa)
Streptomycin 3''-kinase {ECO:0000313|EMBL:CDP53170.1}; EC=2.7.1.87 {ECO:0000313|EMBL:CDP53170.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Streptomycin phosphotransferase, streptomycin-resistance n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA90_PELHB
streptomycin phosphotransferase, streptomycin-resistance
SCNpilot_expt_1000_bf_scaffold_7404_curated_23
unknown

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20632..20793
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7404_curated_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20817..21869)
DNA (1053bp) protein (351aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ugpC; glycerol-3-phosphate transporter ATP-binding subunit; K05816 sn-glycerol 3-phosphate transport system ATP-binding protein [EC:3.6.3.20]
sn-glycerol-3-phosphate import ATP-binding protein UgpC 3 n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=UGPC3_RHIL3 rbh
SCNpilot_expt_1000_bf_scaffold_7404_curated_25
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21871..22719)
DNA (849bp) protein (283aa)
ABC-type sugar transport system, permease component n=1 Tax=Rhizobium sp. CF122 RepID=J3BI00_9RHIZ
Glycerol-3-phosphate transporter membrane protein {ECO:0000313|EMBL:KKB86750.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
sugar ABC transporter permease; K05815 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22730..23614)
DNA (885bp) protein (295aa)
SN-glycerol-3-phosphate transport system permease protein UgpA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA31_PELHB
Glycerol-3-phosphate transporter permease {ECO:0000313|EMBL:KKB86749.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SN-glycerol-3-phosphate transport system permease protein UgpA; K05814 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7404_curated_27
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23709..25040)
DNA (1332bp) protein (444aa)
sn-glycerol-3-phosphate ABC transporter, substrate-binding protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6W5_POLGS
Glycerol-3-phosphate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL31322.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ugpBc; sn-glycerol-3-phosphate ABC transporter substrate-binding protein; K05813 sn-glycerol 3-phosphate transport system substrate-binding protein
Displaying 27 items

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