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SCNpilot_expt_1000_bf_scaffold_7080_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7080_curated_1
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..723
DNA (723bp) protein (241aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12]
UPI0003CFF1D9 related cluster n=1 Tax=unknown RepID=UPI0003CFF1D9
SCNpilot_expt_1000_bf_scaffold_7080_curated_2
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(742..1440)
DNA (699bp) protein (233aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVV9_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:KFG67748.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7080_curated_3
Paenibacillus sp. E194, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1539..2699
DNA (1161bp) protein (387aa)
Putative enolase superfamily enzyme n=2 Tax=Bacillus subtilis subsp. spizizenii RepID=E0U100_BACPZ
Isomerase {ECO:0000313|EMBL:KJB86610.1}; TaxID=1458845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. E194.;"
yitF; enolase superfamily enzyme
SCNpilot_expt_1000_bf_scaffold_7080_curated_4
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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2804..3994
DNA (1191bp) protein (397aa)
sugar binding protein id=4432217 bin=GWF2_Ignavibacteria_35_20 species=Thermococcus zilligii genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
sugar ABC transporter periplasmic protein; K02027 multiple sugar transport system substrate-binding protein
Tax=RBG_13_Caldithrix_44_9_curated
SCNpilot_expt_1000_bf_scaffold_7080_curated_5
Salimicrobium jeotgali, Salimicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

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4060..4983
DNA (924bp) protein (308aa)
Lactose transport system permease protein LacF n=1 Tax=Salimicrobium sp. MJ3 RepID=K2FJN4_9BACI
Lactose transport system permease protein LacF {ECO:0000313|EMBL:EKE31271.1}; TaxID=1230341 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Salimicrobium.;" source="Salimicrobium jeotgali.;"
lacF; sugar ABC transporter permease; K10189 lactose/L-arabinose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7080_curated_6
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4980..5834
DNA (855bp) protein (285aa)
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGP80138.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
Binding-protein-dependent transport systems inner membrane component id=4827599 bin=GWA2_Ignavibacteriae_55_25 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteriae_55_25 organism_group=Ignavibacteria
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7080_curated_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5866..6714
DNA (849bp) protein (283aa)
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; EC=5.3.1.17 {ECO:0000256|HAMAP-Rule:MF_00687};; 5-keto-4-deoxyuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; DKI isomerase {ECO:0000256|HAMAP-Rule:MF_00687}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC:5.3.1.17); K01815 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYN5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7080_curated_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6825..7445
DNA (621bp) protein (207aa)
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:CDX11739.1}; EC=1.1.1.125 {ECO:0000313|EMBL:CDX11739.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
2-deoxy-D-gluconate 3-dehydrogenase; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125]
2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YKN1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7080_curated_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7535..7771
DNA (237bp) protein (79aa)
UPI0003CFC6C1 related cluster n=1 Tax=unknown RepID=UPI0003CFC6C1
Cupin {ECO:0000313|EMBL:ESZ25572.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
cupin
SCNpilot_expt_1000_bf_scaffold_7080_curated_10
unknown

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7921..8127
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7080_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8142..9803)
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003807034
von Willebrand factor type A {ECO:0000313|EMBL:EHK54521.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
von Willebrand factor type A; K07114 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_7080_curated_12
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9864..10346)
DNA (483bp) protein (161aa)
UPI0003CE90A2 related cluster n=1 Tax=unknown RepID=UPI0003CE90A2
Uncharacterized protein {ECO:0000313|EMBL:ESW91309.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7080_curated_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10529..10876)
DNA (348bp) protein (116aa)
Translation initiation factor IF-2 n=1 Tax=Rhizobium sp. RepID=L0NKZ2_RHISP
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
SCNpilot_expt_1000_bf_scaffold_7080_curated_14
unknown

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11016..11225
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7080_curated_15
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

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11661..11906
DNA (246bp) protein (82aa)
Secreted protein n=1 Tax=gut metagenome RepID=J9CI69_9ZZZZ
Tax=RBG_13_Chloroflexi_60_13_curated
SCNpilot_expt_1000_bf_scaffold_7080_curated_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13100..13669)
DNA (570bp) protein (190aa)
Putative nucleic-acid-binding protein implicated in transcription termination / ribosomal protein L7Ae family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA61_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13386.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative nucleic-acid-binding protein implicated in transcription termination / ribosomal protein L7Ae family protein; K07742 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7080_curated_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13739..14470)
DNA (732bp) protein (244aa)
Transcription termination protein NusA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA60_PELHB
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
transcription termination protein NusA; K02600 N utilization substance protein A
SCNpilot_expt_1000_bf_scaffold_7080_curated_18
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14713..15093
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G4Z9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EAU43265.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
hypothetical protein
Displaying 18 items

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