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SCNpilot_expt_1000_bf_scaffold_1225_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1225_curated_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..243
DNA (243bp) protein (81aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
acetohydroxy acid isomeroreductase-like protein; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
PREDICTED: probable ketol-acid reductoisomerase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C16920
SCNpilot_expt_1000_bf_scaffold_1225_curated_2
unknown

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comp(359..853)
DNA (495bp) protein (165aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1225_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1069..1389)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP53687.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_1225_curated_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1558..2061
DNA (504bp) protein (168aa)
UPI0003D05D16 related cluster n=1 Tax=unknown RepID=UPI0003D05D16
UPF0303 protein JP74_08050 {ECO:0000256|HAMAP-Rule:MF_00761}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1225_curated_5
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2130..3017
DNA (888bp) protein (296aa)
Phenazine biosynthesis protein PhzF like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32906.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
phenazine biosynthesis protein PhzF like protein; K06998
SCNpilot_expt_1000_bf_scaffold_1225_curated_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3052..3477
DNA (426bp) protein (142aa)
Putative membrane protein {ECO:0000313|EMBL:KFC66309.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_1225_curated_7
unknown

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3549..3665
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1225_curated_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3780..5345
DNA (1566bp) protein (522aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REW0_PELHB
SCNpilot_expt_1000_bf_scaffold_1225_curated_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5522..6469
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV9_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ51930.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_1225_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6453..7619)
DNA (1167bp) protein (389aa)
Histidinol-phosphate aminotransferase {ECO:0000313|EMBL:CDP51884.1}; EC=2.6.1.57 {ECO:0000313|EMBL:CDP51884.1};; EC=2.6.1.9 {ECO:0000313|EMBL:CDP51884.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
Aminotransferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JU5_MESSB
SCNpilot_expt_1000_bf_scaffold_1225_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7715..8359
DNA (645bp) protein (215aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
peptide methionine sulfoxide reductase; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YK92_MOBAS
SCNpilot_expt_1000_bf_scaffold_1225_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8366..9211)
DNA (846bp) protein (282aa)
mechanosensitive ion channel protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003797E48
Uncharacterized protein {ECO:0000313|EMBL:KKB84873.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
mechanosensitive ion channel protein; K03442 small conductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_1225_curated_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9706..10410
DNA (705bp) protein (235aa)
Integral membrane protein TerC n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KI7_MESSB
Membrane protein {ECO:0000313|EMBL:KKB10617.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
integral membrane protein TerC
SCNpilot_expt_1000_bf_scaffold_1225_curated_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10525..11694
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09945.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1225_curated_15
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11697..13043
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB79929.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1225_curated_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13097..13681)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09943.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1225_curated_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13937..15880
DNA (1944bp) protein (648aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
acetyl-coenzyme A synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV1_PELHB
SCNpilot_expt_1000_bf_scaffold_1225_curated_18
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15970..17757
DNA (1788bp) protein (596aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REV0_PELHB
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:AEQ51921.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_1225_curated_19
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17911..18915
DNA (1005bp) protein (335aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
beta-hexosaminidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
Beta-hexosaminidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU9_PELHB
SCNpilot_expt_1000_bf_scaffold_1225_curated_20
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19060..19869
DNA (810bp) protein (270aa)
Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU6_PELHB
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KFL27541.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase-like protein
SCNpilot_expt_1000_bf_scaffold_1225_curated_21
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20706..20972
DNA (267bp) protein (89aa)
Glycosyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U3C9_9PROT
GDP-mannose-dependent alpha-mannosyltransferase {ECO:0000313|EMBL:KFL27542.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_1225_curated_22
unknown

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comp(21063..21212)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1225_curated_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21519..22232
DNA (714bp) protein (238aa)
Putative 3-phenylpropionic acid transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REU5_PELHB
Putative 3-phenylpropionic acid transporter {ECO:0000313|EMBL:KFC66293.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
putative 3-phenylpropionic acid transporter; K05820 MFS transporter, PPP family, 3-phenylpropionic acid transporter
SCNpilot_expt_1000_bf_scaffold_1225_curated_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22300..23055
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000375F8AC
Uncharacterized protein {ECO:0000313|EMBL:KFL27546.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative 3-phenylpropionic acid transporter; K05820 MFS transporter, PPP family, 3-phenylpropionic acid transporter
Displaying 24 items

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