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SCNpilot_expt_1000_bf_scaffold_4760_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4760_curated_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..341
DNA (339bp) protein (113aa)
cation:proton antiporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003608233
Monovalent cation/H+ antiporter subunit A {ECO:0000313|EMBL:KKB11639.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Na(+) H(+) antiporter subunit A; K05565 multicomponent Na+:H+ antiporter subunit A
SCNpilot_expt_1000_bf_scaffold_4760_curated_2
unknown

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653..742
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4760_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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742..1119
DNA (378bp) protein (126aa)
Na(+) H(+) antiporter subunit C n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCI8_PELHB
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:KFL25488.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Na(+) H(+) antiporter subunit C; K05567 multicomponent Na+:H+ antiporter subunit C
SCNpilot_expt_1000_bf_scaffold_4760_curated_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1119..2693
DNA (1575bp) protein (525aa)
Na(+) H(+) antiporter subunit D n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCI9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL25489.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Na(+) H(+) antiporter subunit D; K05568 multicomponent Na+:H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_4760_curated_5
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2690..3169
DNA (480bp) protein (160aa)
Na(+) H(+) antiporter subunit E n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ0_PELHB
Na(+) H(+) antiporter subunit E; K05569 multicomponent Na+:H+ antiporter subunit E
Na(+) H(+) antiporter subunit E {ECO:0000313|EMBL:AEQ50662.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4760_curated_6
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3166..3474
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003658E5B
Na(+) H(+) antiporter subunit F; K05570 multicomponent Na+:H+ antiporter subunit F
Na(+) H(+) antiporter subunit F {ECO:0000313|EMBL:AEQ50663.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4760_curated_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3471..3821
DNA (351bp) protein (117aa)
Na(+) H(+) antiporter subunit G n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ2_PELHB
Cation:proton antiporter {ECO:0000313|EMBL:KKB11633.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Na(+) H(+) antiporter subunit G; K05571 multicomponent Na+:H+ antiporter subunit G
SCNpilot_expt_1000_bf_scaffold_4760_curated_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3963..4388
DNA (426bp) protein (142aa)
Transcriptional regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ3_PELHB
MucR family transcriptional regulator {ECO:0000313|EMBL:KFL29384.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4760_curated_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4526..4915
DNA (390bp) protein (130aa)
ATPase n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TD56_PARBH
DNA-binding protein {ECO:0000313|EMBL:CDP51590.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ATPase
SCNpilot_expt_1000_bf_scaffold_4760_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4915..5673
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP51589.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4760_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5674..6096)
DNA (423bp) protein (141aa)
Sulfur acceptor protein SufE for iron-sulfur cluster assembly n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ6_PELHB
Sulfur acceptor protein SufE for iron-sulfur clust er assembly {ECO:0000313|EMBL:CDP51588.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
sulfur acceptor protein SufE for iron-sulfur cluster assembly; K02426 cysteine desulfuration protein SufE
SCNpilot_expt_1000_bf_scaffold_4760_curated_12
unknown

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comp(6300..6662)
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4760_curated_13
Lottia gigantea, Lottia, Gastropoda, Mollusca, Metazoa

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comp(6622..7137)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Lottia gigantea RepID=V3ZZJ6_LOTGI
Uncharacterized protein {ECO:0000313|EMBL:ESO96968.1}; TaxID=225164 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Patellogastropoda; Lottioidea; Lottiidae; Lottia.;" source="Lottia gigantea (Giant owl limpet).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4760_curated_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7285..8118
DNA (834bp) protein (278aa)
AraC family transcriptional regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI00_9RHIZ
AraC family transcriptional regulator {ECO:0000313|EMBL:ETR78080.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
AraC family transcriptional regulator; K13652 AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4760_curated_15
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8218..8511)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL29380.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_4760_curated_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8800..10605
DNA (1806bp) protein (602aa)
multi-sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82742.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_4760_curated_17
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10602..10910
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83922.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4760_curated_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10966..11835
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29379.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4760_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11844..12179
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCJ9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB11626.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4760_curated_20
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12192..12776)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCK0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC71402.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
Displaying 20 items

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