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SCNpilot_expt_1000_bf_scaffold_3756_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3756_curated_1
unknown

Not on your lists

comp(1..117)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3756_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(882..1298)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000370E667
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:KFL28475.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
glyoxalase family protein; K04750 PhnB protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1532..2863
DNA (1332bp) protein (444aa)
Multidrug transporter n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4QM52_9CAUL
Multidrug transporter {ECO:0000313|EMBL:KKB11718.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
multidrug resistance protein; K08217 MFS transporter, DHA3 family, macrolide efflux protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_4
unknown

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comp(2864..3325)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3756_curated_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3433..4656)
DNA (1224bp) protein (408aa)
Oxalate/formate antiporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGC2_PELHB
Membrane protein {ECO:0000313|EMBL:KKB11752.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Oxalate/formate antiporter
SCNpilot_expt_1000_bf_scaffold_3756_curated_6
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4811..5275
DNA (465bp) protein (155aa)
UPF0178 protein KKY_1742 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCV0_PELHB
hypothetical protein; K09768 hypothetical protein
UPF0178 protein KKY_1742 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_3756_curated_7
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5421..6371
DNA (951bp) protein (317aa)
RarD protein n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6BJ77_PSEST
Chloramphenicol-sensitive protein RarD {ECO:0000313|EMBL:CEG50839.1}; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
rarD protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6644..6988
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB11026.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_3756_curated_9
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6991..7995
DNA (1005bp) protein (335aa)
Methyl-accepting chemotaxis protein McpH n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAP7_PHEZH
Chemotaxis protein {ECO:0000313|EMBL:KKC38882.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
mcpH; methyl-accepting chemotaxis protein McpH; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8208..8975
DNA (768bp) protein (256aa)
Methyl-accepting chemotaxis protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R973_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32076.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_11
unknown

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comp(9158..9361)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3756_curated_12
unknown

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comp(9440..9646)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3756_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10765..11001
DNA (237bp) protein (79aa)
Sensory box/GGDEF family protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JM33_AGRRK
sensory box/GGDEF family protein
Sensory box/GGDEF family protein {ECO:0000313|EMBL:ACM28747.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_3756_curated_14
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11121..12035)
DNA (915bp) protein (305aa)
inositol degradation protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00036819A8
AP endonuclease, family 2 {ECO:0000313|EMBL:ELP69318.1}; Flags: Fragment;; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
putative inositol degradation protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_15
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12043..13494)
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00037AA660
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH32819.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCNpilot_expt_1000_bf_scaffold_3756_curated_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13616..14317)
DNA (702bp) protein (234aa)
Transcriptional regulator, LuxR family n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EB51_METSZ
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:CCD32207.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
DNA-binding protein with HTH domain
SCNpilot_expt_1000_bf_scaffold_3756_curated_17
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14772..16049
DNA (1278bp) protein (426aa)
Putative ABC transporter protein n=1 Tax=Rhodococcus sp. Mel RepID=H8ZKT0_9NOCA
Nitrate ABC transporter ATPase {ECO:0000313|EMBL:AJY47908.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3756_curated_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16046..16390
DNA (345bp) protein (115aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YR21_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EIM26413.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter permease; K15599 putative hydroxymethylpyrimidine transport system permease protein
Displaying 18 items

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