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SCNpilot_expt_1000_bf_scaffold_12169_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_12169_curated_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..709
DNA (708bp) protein (236aa)
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:CDP50815.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDP50815.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ccoN2; cbb3-type cytochrome oxidase, subunit CcoN; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
cytochrome C oxidase n=1 Tax=Kaistia granuli RepID=UPI000373B191
SCNpilot_expt_1000_bf_scaffold_12169_curated_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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714..1448
DNA (735bp) protein (245aa)
peptidase S41 n=1 Tax=Kaistia granuli RepID=UPI00037A2A7D
Peptidase S41 {ECO:0000313|EMBL:EZQ13044.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
cbb3-type cytochrome c oxidase subunit II; K00405 cytochrome c oxidase cbb3-type subunit II
SCNpilot_expt_1000_bf_scaffold_12169_curated_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1452..1622
DNA (171bp) protein (57aa)
Cbb3-type cytochrome oxidase, subunit CcoQ n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3B3_9RHIZ
cbb3-type cytochrome oxidase, subunit CcoQ
Cbb3-type cytochrome oxidase, subunit CcoQ {ECO:0000313|EMBL:AGK56707.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_12169_curated_4
unknown

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comp(1541..2104)
DNA (564bp) protein (188aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12169_curated_5
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2454..2660
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6417A
Uncharacterized protein {ECO:0000313|EMBL:KKC31347.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_12169_curated_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2672..3460
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003709A11
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:KKC31348.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
putative transmembrane protein
SCNpilot_expt_1000_bf_scaffold_12169_curated_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3457..5640
DNA (2184bp) protein (728aa)
fixI; nitrogen fixation protein FixI (EC:3.6.3.-)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030885B8
Nitrogen fixation protein FixI {ECO:0000313|EMBL:KKC31349.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_12169_curated_8
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5686..5847
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D50EF9
cbb3-type cytochrome oxidase maturation protein
Cytochrome oxidase maturation protein, cbb3-type {ECO:0000313|EMBL:ABG63646.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_12169_curated_9
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5848..6315)
DNA (468bp) protein (156aa)
Putative hemoglobin n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9Q763_9RHOB
Hemoglobin-like protein {ECO:0000313|EMBL:KFC71264.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SEC-independent protein translocase protein TatC; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_12169_curated_10

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comp(6312..6767)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035F4B60
Uncharacterized protein {ECO:0000313|EMBL:KKO12687.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Domain of unknown function (DUF4149)
SCNpilot_expt_1000_bf_scaffold_12169_curated_11
unknown

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comp(7130..7603)
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12169_curated_12

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7932..8099
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Brucella suis F7/06-5 RepID=N8INI6_BRUSS
NnrS family protein; K07234 uncharacterized protein involved in response to NO
Putative NnrS family protein {ECO:0000313|EMBL:ACF98129.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
SCNpilot_expt_1000_bf_scaffold_12169_curated_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8246..9118
DNA (873bp) protein (291aa)
Cytochrome c oxidase polypeptide I {ECO:0000313|EMBL:CDP50491.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDP50491.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSY2_9RHIZ
Displaying 13 items

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