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SCNpilot_expt_1000_bf_scaffold_16157_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_16157_curated_1
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..399)
DNA (399bp) protein (133aa)
Pyrimidine ABC transporter, ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7G7_PELHB
Pyrimidine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC61369.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
pyrimidine ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_16157_curated_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(452..1723)
DNA (1272bp) protein (424aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2]
Dihydropyrimidinase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TF07_MESCW
Dihydropyrimidinase {ECO:0000313|EMBL:KKB10678.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_16157_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1984..2211)
DNA (228bp) protein (76aa)
amaB; allantoate amidohydrolase (EC:3.5.1.6)
N-carbamoyl-beta-alanine amidohydrolase protein {ECO:0000313|EMBL:ACP26240.1}; EC=3.5.1.6 {ECO:0000313|EMBL:ACP26240.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
allantoate amidohydrolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003723D68
SCNpilot_expt_1000_bf_scaffold_16157_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2172..3248)
DNA (1077bp) protein (359aa)
amaB-1; N-carbamoyl-L-amino acid hydrolase 1 (EC:3.5.1.87)
Putative N-carbamyl-L-cysteine amidohydrolase, putative atcC n=1 Tax=Rhizobium sp. RepID=L0NGM8_RHISP
Allantoate amidohydrolase {ECO:0000313|EMBL:KGD99963.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_16157_curated_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3260..4297)
DNA (1038bp) protein (346aa)
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDP52171.1}; EC=1.2.1.27 {ECO:0000313|EMBL:CDP52171.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H1_PELHB
SCNpilot_expt_1000_bf_scaffold_16157_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4836..6164)
DNA (1329bp) protein (443aa)
Omega amino acid--pyruvate aminotransferase {ECO:0000313|EMBL:KKB76358.1}; EC=2.6.1.18 {ECO:0000313|EMBL:KKB76358.1};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
omega-amino acid--pyruvate aminotransferase (EC:2.6.1.18)
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Rhizobium sp. RepID=L0NGX3_RHISP
SCNpilot_expt_1000_bf_scaffold_16157_curated_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6280..6975
DNA (696bp) protein (232aa)
UPI0003D049C6 related cluster n=1 Tax=unknown RepID=UPI0003D049C6
Transcriptional regulator RutR of pyrimidine catab olism (TetR family) {ECO:0000313|EMBL:CDP52169.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transcriptional regulator RutR of pyrimidine catabolism (TetR family); K09017 TetR/AcrR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_16157_curated_8
unknown

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comp(7043..7228)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16157_curated_9
unknown

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7611..7733
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16157_curated_10
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7737..8117)
DNA (381bp) protein (127aa)
UPI0003D03084 related cluster n=1 Tax=unknown RepID=UPI0003D03084
Uncharacterized protein {ECO:0000313|EMBL:KKB76359.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
DoxX family protein
SCNpilot_expt_1000_bf_scaffold_16157_curated_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8314..9126
DNA (813bp) protein (271aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
dihydrodipicolinate reductase n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036E2480
SCNpilot_expt_1000_bf_scaffold_16157_curated_12
unknown

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comp(9549..9701)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16157_curated_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9862..10020)
DNA (159bp) protein (53aa)
ADA regulatory protein / methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
ADA regulatory protein / methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7T4_PELHB
ADA regulatory protein / methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:KFC68682.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Displaying 13 items

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