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SCNpilot_expt_1000_bf_scaffold_1876_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1876_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..282
DNA (282bp) protein (94aa)
iron ABC transporter ATP-binding protein (EC:3.6.3.34); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ferrichrome ABC transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI00037EAE18
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:EJC73504.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1876_curated_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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466..1443
DNA (978bp) protein (326aa)
Aerobic cobaltochelatase CobS subunit {ECO:0000313|EMBL:CDP51817.1}; EC=6.6.1.2 {ECO:0000313|EMBL:CDP51817.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
aerobic cobaltochelatase CobS subunit; K09882 cobaltochelatase CobS [EC:6.6.1.2]
Aerobic cobaltochelatase CobS subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY5_PELHB
SCNpilot_expt_1000_bf_scaffold_1876_curated_3
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2321..3370
DNA (1050bp) protein (350aa)
aerobic cobaltochelatase CobT subunit; K09883 cobaltochelatase CobT [EC:6.6.1.2]
Aerobic cobaltochelatase CobT subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY6_PELHB
Aerobic cobaltochelatase CobT subunit {ECO:0000313|EMBL:KFC66050.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_1876_curated_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3406..4392
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY7_PELHB
ABC-type cobalamin/Fe3+-siderophores transport sys tems, ATPase components {ECO:0000313|EMBL:CDP51820.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_5
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4379..5179)
DNA (801bp) protein (267aa)
Putative preQ0 transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10920.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative preQ0 transporter; K09125 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5321..5605)
DNA (285bp) protein (95aa)
50S ribosomal protein L28 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ0_PELHB
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_1876_curated_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5825..6610
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26178.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_8
unknown

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6706..7113
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1876_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7583..10717
DNA (3135bp) protein (1045aa)
ATP-dependent DNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ6_PELHB
Helicase {ECO:0000313|EMBL:KKB83869.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ATP-dependent DNA helicase
SCNpilot_expt_1000_bf_scaffold_1876_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10727..11026
DNA (300bp) protein (100aa)
RNA-binding protein S4 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000301220A
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CDP51842.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15
SCNpilot_expt_1000_bf_scaffold_1876_curated_11
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11195..11533
DNA (339bp) protein (113aa)
Ferredoxin III protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ8_PELHB
ferredoxin III protein; K05524 ferredoxin
Ferredoxin III protein {ECO:0000313|EMBL:AEQ52931.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_1876_curated_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11854..12411
DNA (558bp) protein (186aa)
CarD-like transcriptional regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF08_PELHB
CarD family transcriptional regulator {ECO:0000313|EMBL:KKB11137.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
CarD-like transcriptional regulator; K07736 CarD family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1876_curated_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12521..13972)
DNA (1452bp) protein (484aa)
Putative Zn-dependent protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF09_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB11134.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Zn-dependent protease
SCNpilot_expt_1000_bf_scaffold_1876_curated_14
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14048..14773)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF10_PELHB
Nuclease (SNase domain protein) {ECO:0000313|EMBL:KKB11142.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15121..16644)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2MXI3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF39968.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_16
unknown

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comp(16667..17218)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1876_curated_17
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17245..18237)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NKL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF39970.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18321..19322)
DNA (1002bp) protein (334aa)
coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin; K00320 coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase [EC:1.5.99.11]
Methylenetetrahydromethanopterin reductase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRP3_RHOP2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1876_curated_19
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19326..20483)
DNA (1158bp) protein (386aa)
Muconate cycloisomerase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FP4_MESSB
mandelate racemase/muconate lactonizing-like protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
SCNpilot_expt_1000_bf_scaffold_1876_curated_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20480..21598)
DNA (1119bp) protein (373aa)
Peptidase M24 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Z7_VARPS
peptidase M24
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
SCNpilot_expt_1000_bf_scaffold_1876_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21598..22392)
DNA (795bp) protein (265aa)
Glycerol-3-phosphate dehydrogenase n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UBG7_FERPD
glycerol-3-phosphate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1876_curated_22
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22806..23492
DNA (687bp) protein (229aa)
Transcriptional regulator, GntR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ICE6_XANP2
Uncharacterized protein {ECO:0000313|EMBL:KJB91588.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1876_curated_23
unknown

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23586..23738
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1876_curated_24
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23785..25029)
DNA (1245bp) protein (415aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KJC33991.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KJC33991.1};; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
aatA; aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aspartate aminotransferase A n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89P56_BRADU
SCNpilot_expt_1000_bf_scaffold_1876_curated_25
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25026..25709)
DNA (684bp) protein (228aa)
Transcriptional regulator n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WE59_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AKE05645.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1876_curated_26
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(25712..27325)
DNA (1614bp) protein (538aa)
Putative uncharacterized protein id=4063407 bin=GWC2_Syntrophus__56_31 species=Deinococcus deserti genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
Tax=CG_Syntroph_01
SCNpilot_expt_1000_bf_scaffold_1876_curated_27
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27338..27802)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) RepID=F0M5G9_ARTPP
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:CDO23139.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1876_curated_28
Deinococcus deserti, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(27881..28858)
DNA (978bp) protein (326aa)
Putative Bug family protein n=1 Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1D3K2_DEIDV
Bug family protein
Putative Bug family protein {ECO:0000313|EMBL:ACO48081.1}; TaxID=546414 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923).;"
Displaying 28 items

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