ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3886_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3886_curated_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..602)
DNA (600bp) protein (200aa)
Lipoprotein releasing system transmembrane protein LolC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R877_PELHB
Multidrug ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB08494.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
lipoprotein releasing system transmembrane protein LolC; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_1000_bf_scaffold_3886_curated_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(599..1948)
DNA (1350bp) protein (450aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01570}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R876_PELHB
SCNpilot_expt_1000_bf_scaffold_3886_curated_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2262..2882)
DNA (621bp) protein (207aa)
Putative amino acid efflux protein, LysE family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9R1_PELHB
Transporter {ECO:0000313|EMBL:KKB11995.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative amino acid efflux protein, LysE family
SCNpilot_expt_1000_bf_scaffold_3886_curated_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2961..5720)
DNA (2760bp) protein (920aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
DNA gyrase subunit A; K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9R2_PELHB
SCNpilot_expt_1000_bf_scaffold_3886_curated_5
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6115..6642
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB79762.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3886_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6720..7220)
DNA (501bp) protein (167aa)
Single-stranded DNA-binding protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QY51_9RHOB
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ssDNA-binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_3886_curated_7
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7362..7892
DNA (531bp) protein (177aa)
N-acetyltransferase GCN5 n=1 Tax=Streptomyces sp. Wigar10 RepID=UPI000317D940
Putative acetyltransferase
Uncharacterized protein {ECO:0000313|EMBL:AGK75605.1}; TaxID=1303692 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
SCNpilot_expt_1000_bf_scaffold_3886_curated_8
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7867..8967)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036CADDC
Uncharacterized protein {ECO:0000313|EMBL:EAP76040.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3886_curated_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8994..9410
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000378403F
UPF0060 membrane protein JP74_10930 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein; K09771 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3886_curated_10
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9477..9650
DNA (174bp) protein (58aa)
UPF0391 membrane protein Smed_4051 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=Y4051_SINMW
UPF0391 membrane protein RRU01S_02_00220 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3886_curated_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9854..11146
DNA (1293bp) protein (431aa)
UvrABC system protein A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S2_PELHB
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
Displaying 11 items

View Taxonomy