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SCNpilot_expt_1000_bf_scaffold_17620_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_17620_curated_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..286)
DNA (285bp) protein (95aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
isocitrate dehydrogenase n=1 Tax=Martelella mediterranea RepID=UPI00037D1A91
SCNpilot_expt_1000_bf_scaffold_17620_curated_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(409..762)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE85_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10515.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_17620_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(755..1114)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE83_PELHB
Gfa-like protein {ECO:0000313|EMBL:CDP50413.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_17620_curated_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1958..2548
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GEQ1_9RHOB
Acetyltransferase {ECO:0000313|EMBL:CDP50415.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_17620_curated_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2596..3345
DNA (750bp) protein (250aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
tRNA:Cm32/Um32 methyltransferase; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
tRNA:Cm32/Um32 methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE81_PELHB
SCNpilot_expt_1000_bf_scaffold_17620_curated_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3434..4681
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00035F3FD1
MFS transporter {ECO:0000313|EMBL:KFL28722.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_17620_curated_7
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4678..5175)
DNA (498bp) protein (166aa)
N-acetyltransferase GCN5 n=1 Tax=Rhizobium sp. Pop5 RepID=K0VEI0_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EJZ17331.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
Aminoglycoside N(6')-acetyltransferase
SCNpilot_expt_1000_bf_scaffold_17620_curated_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5456..6052
DNA (597bp) protein (199aa)
30S ribosomal protein S4 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE79_PELHB
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_expt_1000_bf_scaffold_17620_curated_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6108..7013)
DNA (906bp) protein (302aa)
BacA, bacteroid development protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE78_PELHB
BacA, bacteroid development protein
BacA, bacteroid development protein {ECO:0000313|EMBL:AEQ51842.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Displaying 9 items

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