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SCNpilot_expt_1000_bf_scaffold_6608_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6608_curated_1
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(91..339)
DNA (249bp) protein (83aa)
Putative uncharacterized protein id=3841979 bin=GWF2_Planctomycetes_42_9 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCNpilot_expt_1000_bf_scaffold_6608_curated_2
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

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comp(429..1610)
DNA (1182bp) protein (394aa)
Putative Xaa-Pro dipeptidase id=2950080 bin=GWF2_Lentisphaerae_52_8 species=Clostridium sp. D5 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
proline dipeptidase
Tax=GWF2_Lentisphaerae_52_8_curated
SCNpilot_expt_1000_bf_scaffold_6608_curated_3
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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1624..2841
DNA (1218bp) protein (406aa)
LacI family transcription regulator n=1 Tax=Amycolatopsis balhimycina RepID=UPI000370C480
lacI; LacI family transcriptional regulator
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCNpilot_expt_1000_bf_scaffold_6608_curated_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3447..4694)
DNA (1248bp) protein (416aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG69_PELHB
SCNpilot_expt_1000_bf_scaffold_6608_curated_5
unknown

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4837..5736
DNA (900bp) protein (300aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6608_curated_6
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5779..6105
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG70_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ53046.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_6608_curated_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6109..6480)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037581DC
Uncharacterized protein {ECO:0000313|EMBL:KKB11008.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative transcription regulator with HTH domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6608_curated_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6491..6793)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287DF01
Uncharacterized protein {ECO:0000313|EMBL:KHA64583.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6608_curated_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6829..8010)
DNA (1182bp) protein (394aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
pyruvate carboxyl transferase; K01958 pyruvate carboxylase [EC:6.4.1.1]
Pyruvate carboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG72_PELHB
SCNpilot_expt_1000_bf_scaffold_6608_curated_10
Dialister sp. CAG:486, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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8160..10388
DNA (2229bp) protein (743aa)
Choline dehydrogenase n=1 Tax=Dialister sp. CAG:486 RepID=R6AAV7_9FIRM
Choline dehydrogenase {ECO:0000313|EMBL:CDA48120.1}; TaxID=1262870 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialister sp. CAG:486.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6608_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10360..10770)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG73_PELHB
Sulfide-quinone reductase {ECO:0000313|EMBL:CDP53781.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6608_curated_12
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10878..11777)
DNA (900bp) protein (300aa)
Substrate-binding region of ABC-type glycine betaine transport system n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG75_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53784.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
substrate-binding region of ABC-type glycine betaine transport system; K02002 glycine betaine/proline transport system substrate-binding protein
Displaying 12 items

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