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SCNpilot_expt_1000_bf_scaffold_5090_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5090_curated_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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3..1163
DNA (1161bp) protein (387aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
AcnA n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D9N5_LARHH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_5090_curated_2
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1193..2737
DNA (1545bp) protein (515aa)
ABC transporter substrate-binding protein n=1 Tax=Brevibacillus panacihumi W25 RepID=V6M872_9BACL
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EST51533.1}; TaxID=1408254 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5090_curated_3
Geomicrobium sp. JCM 19055, Bacillales, Bacilli, Firmicutes, Bacteria

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2761..3720
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI000369FF4E
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:GAJ98216.1}; TaxID=1460649 species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19055.;"
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5090_curated_4
unknown

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comp(3747..4031)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5090_curated_5
Geomicrobium sp. JCM 19038, Bacillales, Bacilli, Firmicutes, Bacteria

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4324..4632
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI00030FB60A
Dipeptide transport system permease protein DppC {ECO:0000313|EMBL:GAK07748.1}; TaxID=1460635 species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19038.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5090_curated_6
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4626..5663
DNA (1038bp) protein (346aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Cohnella laeviribosi RepID=UPI0003656CAA
Putative peptide ABC transporter ATP-binding protein y4tR {ECO:0000313|EMBL:CQR55623.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
oligopeptide/dipeptide ABC transporter ATPase subunit; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_5090_curated_7
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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5855..6580
DNA (726bp) protein (242aa)
Oligopeptide ABC transporter, ATP-binding protein n=1 Tax=Bacillus megaterium (strain DSM 319) RepID=D5DF16_BACMD
oligopeptide ABC transporter ATP-binding protein; K10823 oligopeptide transport system ATP-binding protein
Oligopeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ADF38689.1}; TaxID=592022 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium (strain DSM 319).;"
SCNpilot_expt_1000_bf_scaffold_5090_curated_8
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6775..7431
DNA (657bp) protein (219aa)
Propionate catabolism operon transcriptional regulator of GntR family n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W0R8_9MICO
Propionate catabolism operon transcriptional regulator of GntR family {ECO:0000313|EMBL:EPR75287.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
putative GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5090_curated_9
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(7233..8336)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Kocuria atrinae RepID=UPI0003688751
Transcriptional regulator C XRE family {ECO:0000313|EMBL:AJC60652.1}; TaxID=1262452 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
SCNpilot_expt_1000_bf_scaffold_5090_curated_10
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8702..8932
DNA (231bp) protein (77aa)
Dihydroxyacetone kinase n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3P8U4_LEIXC
dihydroxyacetone kinase
Uncharacterized protein {ECO:0000313|EMBL:AGW42720.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCNpilot_expt_1000_bf_scaffold_5090_curated_11
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9051..9890)
DNA (840bp) protein (280aa)
Beta-lactamase class A n=1 Tax=Herbaspirillum sp. CF444 RepID=J2L9Q8_9BURK
Beta-lactamase class A {ECO:0000313|EMBL:EJL81923.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
putative beta-lactamase precursor protein
SCNpilot_expt_1000_bf_scaffold_5090_curated_12
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9887..10798)
DNA (912bp) protein (304aa)
hypothetical protein; K01467 beta-lactamase [EC:3.5.2.6]
Beta-lactamase class A n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HR10_9BURK
Beta-lactamase class A {ECO:0000313|EMBL:EJN02908.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
SCNpilot_expt_1000_bf_scaffold_5090_curated_13
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10927..12102)
DNA (1176bp) protein (392aa)
Major facilitator superfamily MFS_1 n=2 Tax=Saccharopolyspora erythraea RepID=A4FHT4_SACEN
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:EQD81651.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
SCNpilot_expt_1000_bf_scaffold_5090_curated_14
Gaeumannomyces graminis, Gaeumannomyces, Magnaporthales, Sordariomycetidae, Ascomycota, Fungi

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12334..13056
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Gaeumannomyces graminis var. tritici (strain R3-111a-1) RepID=J3PG49_GAGT3
Uncharacterized protein {ECO:0000313|EMBL:EJT70303.1, ECO:0000313|EnsemblFungi:GGTG_12475T0}; TaxID=644352 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Magnaporthales; Magnaporthaceae; Gaeumannomyces.;" source="Gaeumannomyces graminis var. tritici (strain R3-111a-1) (Wheat and; barley take-all root rot fungus).;"
SCNpilot_expt_1000_bf_scaffold_5090_curated_15
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13049..13870
DNA (822bp) protein (274aa)
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:KKB08516.1}; EC=3.6.1.19 {ECO:0000313|EMBL:KKB08516.1};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
nucleoside triphosphate pyrophosphohydrolase MazG; K04765 ATP diphosphatase [EC:3.6.1.8]
Nucleoside triphosphate pyrophosphohydrolase MazG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R907_PELHB
SCNpilot_expt_1000_bf_scaffold_5090_curated_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13867..14559)
DNA (693bp) protein (231aa)
GTPase HflX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R906_PELHB
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
GTP-binding protein HflX; K03665 GTP-binding protein HflX
SCNpilot_expt_1000_bf_scaffold_5090_curated_17
unknown

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15010..15255
DNA (246bp) protein (82aa)

This feature has no annotations

Displaying 17 items

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