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SCNpilot_expt_1000_bf_scaffold_2852_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2852_curated_1
unknown

Not on your lists

comp(2..1102)
DNA (1101bp) protein (367aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2852_curated_2
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1637..2947
DNA (1311bp) protein (437aa)
Sugar transferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGX3_PELHB
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AEQ53126.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_2852_curated_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2891..3946)
DNA (1056bp) protein (352aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2LAU3_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:KKB11462.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2852_curated_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4661..6079
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037217C7
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM35242.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
solute-binding component of ABC transporter
SCNpilot_expt_1000_bf_scaffold_2852_curated_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6163..8268
DNA (2106bp) protein (702aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036ABD2A
Uncharacterized protein {ECO:0000313|EMBL:KGM35243.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_6
unknown

Not on your lists

8354..8542
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2852_curated_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8715..9704
DNA (990bp) protein (330aa)
ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000376B4D2
ABC transporter permease {ECO:0000313|EMBL:KGM35244.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9704..10876
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037D1B78
Peptide ABC transporter permease {ECO:0000313|EMBL:KKB11458.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10946..12694
DNA (1749bp) protein (583aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036698D4
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB11457.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12703..13479
DNA (777bp) protein (259aa)
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
hydroxypyruvate isomerase n=1 Tax=Rhizobium leguminosarum RepID=UPI000379B551
SCNpilot_expt_1000_bf_scaffold_2852_curated_11
unknown

Not on your lists

comp(13407..13556)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2852_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14530..16545
DNA (2016bp) protein (672aa)
glycoside hydrolase family 42; K01190 beta-galactosidase [EC:3.2.1.23]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000366AC64
Beta-galactosidase {ECO:0000313|EMBL:KGM35245.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_2852_curated_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16591..17196)
DNA (606bp) protein (202aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UAX8_9RHIZ
CMD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17205..17852)
DNA (648bp) protein (216aa)
CMD domain protein, Avi_7170 family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWQ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG69554.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_15
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17865..18062)
DNA (198bp) protein (66aa)
Putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWQ6_9RHIZ
Putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family {ECO:0000313|EMBL:EIM28398.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2852_curated_16
unknown

Not on your lists

18493..18936
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2852_curated_17
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18893..20500)
DNA (1608bp) protein (536aa)
nickel-transporting ATPase (EC:3.6.3.30 3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
glutathione ABC transporter ATP-binding protein n=1 Tax=Acidovorax radicis RepID=UPI0002376DC4
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGM32111.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_2852_curated_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20500..21375)
DNA (876bp) protein (292aa)
ABC transporter permease protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AG49_RHIFH
ABC transporter permease; K02034 peptide/nickel transport system permease protein
ABC transporter permease protein {ECO:0000313|EMBL:CCF00031.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_2852_curated_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21372..22316)
DNA (945bp) protein (315aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWQ3_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EIM28395.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_20
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22375..24018)
DNA (1644bp) protein (548aa)
ABC transporter substrate binding protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4T2_AGRVS
ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:KEC80256.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
ABC transporter substrate binding protein (oligopeptide); K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_21
unknown

Not on your lists

24563..24778
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2852_curated_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24852..25457
DNA (606bp) protein (202aa)
FMN reductase {ECO:0000313|EMBL:CDP50746.1}; EC=1.5.1.- {ECO:0000313|EMBL:CDP50746.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
NADPH-dependent FMN reductase; K00299 FMN reductase [EC:1.5.1.38]
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00035C0A94
SCNpilot_expt_1000_bf_scaffold_2852_curated_23
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25552..26001
DNA (450bp) protein (150aa)
Putative HTH-type transcriptional regulator rrf2-like n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1S2_9RHIZ
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:KKB07105.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
BadM/Rrf2 family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2852_curated_24
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26448..27338
DNA (891bp) protein (297aa)
UPI0003CE5919 related cluster n=1 Tax=unknown RepID=UPI0003CE5919
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KFL30509.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2852_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27357..28832)
DNA (1476bp) protein (492aa)
von Willebrand factor A n=1 Tax=Asticcacaulis sp. AC402 RepID=V4MWC9_9CAUL
Strain MEJ076 contig_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIP99528.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
von willebrand factor type a
SCNpilot_expt_1000_bf_scaffold_2852_curated_26
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29057..30277
DNA (1221bp) protein (407aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BRE1_9RHIZ
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:EIM72143.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_2852_curated_27
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30378..31079)
DNA (702bp) protein (234aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Thiosulfate sulfurtransferase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YR61_9RHOO
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_1000_bf_scaffold_2852_curated_28
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31224..31655)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B3067F
Uncharacterized protein {ECO:0000313|EMBL:KKB79454.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
cytochrome C biogenesis protein
SCNpilot_expt_1000_bf_scaffold_2852_curated_29
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32472..33341
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E74BF
Membrane protein {ECO:0000313|EMBL:KKC41077.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein; K07112
SCNpilot_expt_1000_bf_scaffold_2852_curated_30
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33287..33661
DNA (375bp) protein (125aa)
Putative transporter component n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HDB4_9PROT
Membrane protein {ECO:0000313|EMBL:KFL29022.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative transporter component; K07112
Displaying items 1-30 of 46 in total

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