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SCNpilot_expt_1000_bf_scaffold_4968_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4968_curated_1
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..527
DNA (525bp) protein (175aa)
Sialic acid TRAP transporter permease protein siaT N-acetylneuraminic acid permease Neu5Ac permease N-acetylneuraminic acid transporter n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7H0_RHIFH
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KKB76926.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Sialic acid TRAP transporter permease protein siaT N-acetylneuraminic acid permease; Neu5Ac permease; N-acetylneuraminic acid transporter
SCNpilot_expt_1000_bf_scaffold_4968_curated_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(582..1685)
DNA (1104bp) protein (368aa)
ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030BC0D6
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB76927.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_4968_curated_3
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1879..2643)
DNA (765bp) protein (255aa)
2,4-diketo-3-deoxy-L-fuconate hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAQ2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC41055.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
2,4-diketo-3-deoxy-L-fuconate hydrolase
SCNpilot_expt_1000_bf_scaffold_4968_curated_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2810..3241)
DNA (432bp) protein (144aa)
RbsD/FucU transport protein family; K02431 L-fucose mutarotase [EC:5.1.3.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003660126
Uncharacterized protein {ECO:0000313|EMBL:KFL26145.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_4968_curated_5
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3257..4012)
DNA (756bp) protein (252aa)
Transcriptional regulator, GntR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCW6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC41057.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4968_curated_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4144..5694
DNA (1551bp) protein (517aa)
Altronate hydrolase {ECO:0000313|EMBL:CDP51010.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CDP51010.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
D-galactarate dehydratase/Altronate hydrolase domain-containing protein (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A941A
SCNpilot_expt_1000_bf_scaffold_4968_curated_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5937..6380
DNA (444bp) protein (148aa)
Nucleoside diphosphate kinase regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVG5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB10771.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
nucleoside diphosphate kinase regulator; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_1000_bf_scaffold_4968_curated_8
unknown

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comp(6269..6505)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4968_curated_9
unknown

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6562..6774
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4968_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6829..8301
DNA (1473bp) protein (491aa)
succinic semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H9J7_RHILT
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EJB07028.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_4968_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8394..10760
DNA (2367bp) protein (789aa)
Lead, cadmium, zinc and mercury transporting ATPas e {ECO:0000313|EMBL:CDP50995.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CDP50995.1};; EC=3.6.3.4 {ECO:0000313|EMBL:CDP50995.1};; EC=3.6.3.5 {ECO:0000313|EMBL:CDP50995.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
cation transporting P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Heavy metal translocating P-type ATPase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LJH2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4968_curated_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10861..12033
DNA (1173bp) protein (391aa)
lldD; putative L-lactate dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V189_9RHIZ
L-lactate dehydrogenase {ECO:0000313|EMBL:KFC62088.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_4968_curated_13
unknown

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12194..12346
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4968_curated_14
unknown

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12572..12685
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4968_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12879..12983)
DNA (105bp) protein (35aa)
membrane protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003782890
ABC transporter; K11605 manganese/iron transport system permease protein
Membrane protein {ECO:0000313|EMBL:AHF85474.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_4968_curated_16
unknown

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13197..13568
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4968_curated_17
unknown

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13821..14159
DNA (339bp) protein (113aa)

This feature has no annotations

Displaying 17 items

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