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SCNpilot_expt_1000_bf_scaffold_4934_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4934_curated_1
unknown

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4934_curated_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(128..1150)
DNA (1023bp) protein (341aa)
Lipase/esterase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SHH8_9SPHN
lipase/esterase
Lipase/esterase {ECO:0000313|EMBL:AGH50037.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4934_curated_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1227..1712)
DNA (486bp) protein (162aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB08529.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_expt_1000_bf_scaffold_4934_curated_4
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2335..2640)
DNA (306bp) protein (102aa)
UPI0003CEC72E related cluster n=1 Tax=unknown RepID=UPI0003CEC72E
Uncharacterized protein {ECO:0000313|EMBL:ESW65618.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
Recombinase
SCNpilot_expt_1000_bf_scaffold_4934_curated_5
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2984..3856)
DNA (873bp) protein (291aa)
Recombinase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCB9_MESOW
Recombinase
Recombinase {ECO:0000313|EMBL:AEH86652.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_4934_curated_6
unknown

Not on your lists

comp(3873..4103)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4934_curated_7
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4445..4747
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N4I9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGJ03456.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4934_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4744..5175
DNA (432bp) protein (144aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Ribonuclease VapC n=1 Tax=Nitratireductor indicus C115 RepID=K2PMJ0_9RHIZ
PilT domain-containing protein; K07062
SCNpilot_expt_1000_bf_scaffold_4934_curated_9
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5425..6783)
DNA (1359bp) protein (453aa)
HD-GYP domain-containing protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YK53_9BRAD
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:KJC46134.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
metal-dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_4934_curated_10
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6874..7536
DNA (663bp) protein (221aa)
Conjugative transfer protein TrbI n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCZ5_PELHB
conjugative transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AEQ52778.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4934_curated_11
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7547..7780
DNA (234bp) protein (78aa)
Uncharacterized conserved small protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KEI2_MESAW
uncharacterized conserved small protein
Uncharacterized conserved small protein {ECO:0000313|EMBL:AGB43416.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_4934_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8030..9055
DNA (1026bp) protein (342aa)
ATPase central domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HX18_9RHIZ
ATPase central domain-containing protein {ECO:0000313|EMBL:EHK54738.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATPase central domain-containing protein
Displaying 12 items

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