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SCNpilot_expt_1000_bf_scaffold_2866_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2866_curated_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1815
DNA (1815bp) protein (605aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG43_PELHB
SCNpilot_expt_1000_bf_scaffold_2866_curated_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2153..2812
DNA (660bp) protein (220aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
glucose-1-phosphate adenylyltransferase; K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
Glucose-1-phosphate adenylyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG42_PELHB
SCNpilot_expt_1000_bf_scaffold_2866_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2824..3066
DNA (243bp) protein (81aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
glucose-1-phosphate adenylyltransferase; K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
Glucose-1-phosphate adenylyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG42_PELHB
SCNpilot_expt_1000_bf_scaffold_2866_curated_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3063..4526
DNA (1464bp) protein (488aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
glycogen synthase, ADP-glucose transglucosylase; K00703 starch synthase [EC:2.4.1.21]
Glycogen synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG41_PELHB
SCNpilot_expt_1000_bf_scaffold_2866_curated_5
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4507..6138
DNA (1632bp) protein (544aa)
phosphoglucomutase; K01835 phosphoglucomutase [EC:5.4.2.2]
Phosphoglucomutase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG40_PELHB
Phosphoglucomutase {ECO:0000313|EMBL:KKB85553.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_1000_bf_scaffold_2866_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6152..8917
DNA (2766bp) protein (922aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
glycogen debranching protein; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG39_PELHB
SCNpilot_expt_1000_bf_scaffold_2866_curated_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8914..9378)
DNA (465bp) protein (155aa)
Acetyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYW6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB84965.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_2866_curated_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9409..9840)
DNA (432bp) protein (144aa)
UPI0003D067CE related cluster n=1 Tax=unknown RepID=UPI0003D067CE
Uncharacterized protein {ECO:0000313|EMBL:KKB84963.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2866_curated_9
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9932..10369)
DNA (438bp) protein (146aa)
Urease accessory protein UreE n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPW2_RHITR
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ureE; urease accessory protein UreE
SCNpilot_expt_1000_bf_scaffold_2866_curated_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10969..11316)
DNA (348bp) protein (116aa)
Periplasmic protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA40_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10043.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2866_curated_11
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11509..12345
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R678_9RHOB
Putative diheme cytochrome c-553 {ECO:0000313|EMBL:KHQ52115.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
Class I diheme cytochrome c
SCNpilot_expt_1000_bf_scaffold_2866_curated_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12359..12748)
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB80026.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_2866_curated_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13203..14087
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Claviceps purpurea (strain 20.1) RepID=M1W3E0_CLAP2
Uncharacterized protein {ECO:0000313|EMBL:KKB84947.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2866_curated_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14362..15597
DNA (1236bp) protein (412aa)
GTP-binding protein n=1 Tax=Mycobacterium marinum MB2 RepID=S7SM79_MYCMR
Uncharacterized protein {ECO:0000313|EMBL:KFC66400.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
PE_PGRS; Conserved protein of unknown function, PE-PGRS family protein PE_PGRS54
SCNpilot_expt_1000_bf_scaffold_2866_curated_15
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

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15707..17122
DNA (1416bp) protein (472aa)
Ankyrin repeat protein, putative n=1 Tax=Trichomonas vaginalis RepID=A2FTQ7_TRIVA
ankyrin repeat protein
Ankyrin repeat protein, putative {ECO:0000313|EMBL:EAX91696.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
SCNpilot_expt_1000_bf_scaffold_2866_curated_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17163..17933
DNA (771bp) protein (257aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:CDP50841.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CDP50841.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
3-oxoacyl-ACP reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037AB963
putative lipid biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase
SCNpilot_expt_1000_bf_scaffold_2866_curated_17
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17956..19395)
DNA (1440bp) protein (480aa)
Multidrug transporter AcrB n=2 Tax=Labrenzia RepID=U7FYU6_9RHOB
RND multidrug efflux transporter Acriflavin resis tance protein {ECO:0000313|EMBL:CDP50321.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
Displaying 17 items

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