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SCNpilot_expt_1000_bf_scaffold_3020_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3020_curated_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49..438
DNA (390bp) protein (130aa)
extradiol dioxygenase n=1 Tax=Rhizobium meliloti RepID=UPI00037C8CD4
Extradiol dioxygenase {ECO:0000313|EMBL:KFL27613.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_1000_bf_scaffold_3020_curated_2
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

504..1430
DNA (927bp) protein (309aa)
Aldo/keto reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JQ2_MESSB
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABG62373.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1611..1898
DNA (288bp) protein (96aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP51728.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1899..2597)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7N5_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH88483.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_5
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2597..3325)
DNA (729bp) protein (243aa)
UPI0003CE2781 related cluster n=1 Tax=unknown RepID=UPI0003CE2781
Short-chain dehydrogenase {ECO:0000313|EMBL:ESY58560.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_3020_curated_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3340..3840)
DNA (501bp) protein (167aa)
UPI0003CF7FAF related cluster n=1 Tax=unknown RepID=UPI0003CF7FAF
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:CDP51726.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
cupin 2 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_7
Synechococcus sp. JA-3-3Ab, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3837..5000)
DNA (1164bp) protein (388aa)
cefD; isopenicillin N-epimerase (EC:5.1.1.17); K04127 isopenicillin-N epimerase [EC:5.1.1.17]
Isopenicillin N-epimerase {ECO:0000313|EMBL:ABC99023.1}; EC=5.1.1.17 {ECO:0000313|EMBL:ABC99023.1};; TaxID=321327 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium; Yellowstone A-Prime).;"
Isopenicillin N-epimerase n=1 Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=Q2JW49_SYNJA
SCNpilot_expt_1000_bf_scaffold_3020_curated_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4997..5935)
DNA (939bp) protein (313aa)
L-arabinose 1-dehydrogenase; K00035 D-galactose 1-dehydrogenase [EC:1.1.1.48]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363CAA3
Galactose 1-dehydrogenase {ECO:0000313|EMBL:KFL27621.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6433..6633
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP51852.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6540..7688)
DNA (1149bp) protein (383aa)
ttuD; hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81]
Hydroxypyruvate reductase n=25 Tax=Brucella abortus RepID=C9U1W9_BRUAO
Hydroxypyruvate reductase {ECO:0000313|EMBL:KKB82291.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_11
unknown

Not on your lists

8099..8272
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3020_curated_12
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8357..9067
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C45_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KKB77806.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_13
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9055..10191
DNA (1137bp) protein (379aa)
Metal-dependent hydrolase involved in phosphonate metabolism n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RCE9_9RHIZ
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:KKB08087.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phnM; protein phnM; K06162 PhnM protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10193..10744
DNA (552bp) protein (184aa)
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; K05774 ribose 1,5-bisphosphokinase [EC:2.7.4.23]
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JSA0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB08086.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_15
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10801..10950
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF73_PELHB
Membrane protein {ECO:0000313|EMBL:KFL32243.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_16
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11183..12475)
DNA (1293bp) protein (431aa)
UPI0003CE3722 related cluster n=1 Tax=unknown RepID=UPI0003CE3722
L-rhamnose catabolism isomerase
Sugar isomerase {ECO:0000313|EMBL:ESY79260.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12538..14613)
DNA (2076bp) protein (692aa)
short-chain dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000371EB8A
Short-chain dehydrogenase {ECO:0000313|EMBL:KKB12095.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3020_curated_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14792..15604
DNA (813bp) protein (271aa)
Transcription regulator DeoR family n=2 Tax=Rhizobium fredii RepID=G9AB06_RHIFH
Transcriptional regulator of rhamnose utilization, DeoR family {ECO:0000313|EMBL:CDP53414.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transcription regulator DeoR family; K03477 DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_3020_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15680..16681
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375D502
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB12097.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
lsrB; autoinducer 2-binding protein LsrB
SCNpilot_expt_1000_bf_scaffold_3020_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16764..18314
DNA (1551bp) protein (517aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377525B
ABC transporter
SCNpilot_expt_1000_bf_scaffold_3020_curated_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18311..19291
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003812A2E
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KKB86559.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
inner-membrane translocator; K10560 rhamnose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_22
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19288..20295
DNA (1008bp) protein (336aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI00037D1995
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:AID27939.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
sugar ABC transporter permease; K10561 rhamnose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3020_curated_23
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20295..21671
DNA (1377bp) protein (459aa)
Pentulose/hexulose kinase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KW30_MESAW
Carbohydrate kinase {ECO:0000313|EMBL:KFL26287.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
pentulose/hexulose kinase
SCNpilot_expt_1000_bf_scaffold_3020_curated_24
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21682..22722)
DNA (1041bp) protein (347aa)
UPI0003CE1301 related cluster n=1 Tax=unknown RepID=UPI0003CE1301
Sugar ABC transporter permease {ECO:0000313|EMBL:ESZ00691.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters
SCNpilot_expt_1000_bf_scaffold_3020_curated_25
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22772..23053)
DNA (282bp) protein (94aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
D-ribose transporter ATP binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000374A5AA
D-ribose transporter ATP binding protein {ECO:0000313|EMBL:ESX81096.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23098..24303)
DNA (1206bp) protein (402aa)
ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
D-ribose transporter ATP binding protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000364A1F7
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:EJC72026.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_3020_curated_27
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24365..25315)
DNA (951bp) protein (317aa)
Sugar (D-ribose) ABC transporter periplasmic sugar-binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7C9_9RHIZ
Sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein {ECO:0000313|EMBL:CCV10027.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ribose ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3020_curated_28
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25518..25724)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10843.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_29
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26160..26729)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S4A3S3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKB10844.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3020_curated_30
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26989..27945
DNA (957bp) protein (319aa)
HTH-type transcriptional regulator AglR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5M4_9RHIZ
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDP53407.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Displaying items 1-30 of 57 in total

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