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SCNpilot_expt_1000_bf_scaffold_10221_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10221_curated_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1400
DNA (1398bp) protein (466aa)
Signal recognition particle protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z9_PELHB
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
signal recognition particle, subunit Ffh SRP54; K03106 signal recognition particle subunit SRP54
SCNpilot_expt_1000_bf_scaffold_10221_curated_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1432..1803
DNA (372bp) protein (124aa)
30S ribosomal protein S16 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=RS16_AZOC5
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_expt_1000_bf_scaffold_10221_curated_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1807..2349
DNA (543bp) protein (181aa)
Ribosome maturation factor RimM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z7_PELHB
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
SCNpilot_expt_1000_bf_scaffold_10221_curated_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2346..3059
DNA (714bp) protein (238aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
tRNA (Guanine37-N1) -methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z6_PELHB
SCNpilot_expt_1000_bf_scaffold_10221_curated_5
unknown

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comp(3056..3271)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10221_curated_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3823..4611
DNA (789bp) protein (263aa)
intradiol ring-cleavage dioxygenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A1861
Uncharacterized protein {ECO:0000313|EMBL:KKB09946.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
catechol 1,2-dioxygenase
SCNpilot_expt_1000_bf_scaffold_10221_curated_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4923..5888
DNA (966bp) protein (322aa)
Thioredoxin domain-containing protein EC-YbbN n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QW23_9RHIZ
Thioredoxin {ECO:0000313|EMBL:KKB06891.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
thioredoxin; K05838 putative thioredoxin
SCNpilot_expt_1000_bf_scaffold_10221_curated_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5896..6561
DNA (666bp) protein (222aa)
Uncharacterized protein, similar to the N-terminal domain of Lon protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N7_PELHB
Peptidase S16 {ECO:0000313|EMBL:KFL27782.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein; K07157
SCNpilot_expt_1000_bf_scaffold_10221_curated_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6561..6812
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N8_PELHB
FIG002473: Protein YcaR in KDO2-Lipid A biosynthes is cluster {ECO:0000313|EMBL:CDP52264.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K09791 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10221_curated_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6809..7699)
DNA (891bp) protein (297aa)
2-octaprenyl-6-methoxyphenol hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7N9_PELHB
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:CDP52263.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_expt_1000_bf_scaffold_10221_curated_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8252..8590
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7P0_PELHB
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KKB06884.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
SCNpilot_expt_1000_bf_scaffold_10221_curated_12
unknown

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comp(8694..8798)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10221_curated_13
unknown

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comp(8973..9155)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10221_curated_14
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9591..9797
DNA (207bp) protein (69aa)
Ammonium transporter n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BUZ9_9GAMM
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ammonium transporter; K03320 ammonium transporter, Amt family
Displaying 14 items

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