ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8060_curated_2

Organism: scnpilot_dereplicated_Devosia_3

partial RP 28 / 55 BSCG 26 / 51 ASCG 7 / 38
Location: comp(124..744)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA59_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 65.5
  • Coverage: 203.0
  • Bit_score: 267
  • Evalue 1.50e-68
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.9
  • Coverage: 208.0
  • Bit_score: 323
  • Evalue 2.50e-85
clustered with transcription termination protein NusA; K09748 ribosome maturation factor RimP similarity KEGG
DB: KEGG
  • Identity: 65.5
  • Coverage: 203.0
  • Bit_score: 267
  • Evalue 4.70e-69

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Devosia limi → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
GTGGCTTTCGACCTCACCGAACGCCGCTACGTCAAGGAAACCGGCCTCGAAACGCGCATCGCGCGGATCGTGGAGCCGGTGGCCAATGATCTGGGCTACAGCCTCGTGCGGATAAAGATCACGCAGGAGAATGGCTGCACGCTGCAGATCATGGCCGAGGACGAGAACGGCCGCTTCACCATCACCGATTGCGAGCGGCTGAGCAAAGACGTCTCGCCCGTCCTCGATGTCGAGGATCCGATCGACCGCGAATATCACCTCGAGGTGTCGTCGCCGGGGATCGACCGGCCGCTGGTGCGGGCGCGCGATTTCGCCGCCTATGTCGGCCACGAGGTCAAGGTCGAGCTTGCCGACATGCTTGATGGGCGCCGCCGCTTCCGCGGCATCATCAAGGCGGTGGACGGCGACCATGTCGTCATCACGCTGCCCGACGCGCCCAAGGATACCGACCCCGACCACCGGCTGCCGCTGGCCCTGCTGGCCGAAGCCAAGCTGGTGATGACCGATGCGCTGCTCAACATGGCGCGCACCGCCCAGCAAGACAATCCGATCGACGACGACGAGGACATCGAGACCGTCGAGATCGCCGAAACTGCCGACTCTGAAGAGGAGACGAACTGA
PROTEIN sequence
Length: 207
VAFDLTERRYVKETGLETRIARIVEPVANDLGYSLVRIKITQENGCTLQIMAEDENGRFTITDCERLSKDVSPVLDVEDPIDREYHLEVSSPGIDRPLVRARDFAAYVGHEVKVELADMLDGRRRFRGIIKAVDGDHVVITLPDAPKDTDPDHRLPLALLAEAKLVMTDALLNMARTAQQDNPIDDDEDIETVEIAETADSEEETN*