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SCNpilot_expt_1000_bf_scaffold_8060_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8060_curated_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..123)
DNA (123bp) protein (41aa)
NusA antitermination factor n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IIJ9_BEII9
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NusA antitermination factor; K02600 N utilization substance protein A
SCNpilot_expt_1000_bf_scaffold_8060_curated_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124..744)
DNA (621bp) protein (207aa)
Ribosome maturation factor RimP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA59_PELHB
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
clustered with transcription termination protein NusA; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_8060_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(885..1553)
DNA (669bp) protein (223aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TL82_RICCO
Sensory box/GGDEF family protein {ECO:0000313|EMBL:KEC73302.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_4
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1980..2192
DNA (213bp) protein (71aa)
Mlr5400 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98BW5_RHILO
Uncharacterized protein {ECO:0000313|EMBL:KKB78754.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2290..2685
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQ63_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31926.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_1000_bf_scaffold_8060_curated_6
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2878..3303
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PGS1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:BAQ15665.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3314..3778
DNA (465bp) protein (155aa)
Putative cyclic nucleotide binding protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0THL1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFL32328.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cyclic nucleotide binding protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3780..4103
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00038035B2
SelT/selW/selH selenoprotein domain protein {ECO:0000313|EMBL:KFC64341.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein; K07401 selenoprotein W-related protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_9

Not on your lists

4159..4524
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZM8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AIA12930.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09946 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_10
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4631..5416
DNA (786bp) protein (262aa)
Amino acid ABC transporter, periplasmic amino acid-binding protein n=2 Tax=Pseudovibrio RepID=G8PQR4_PSEUV
Amino acid ABC transporter {ECO:0000313|EMBL:KFL32325.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
amino acid ABC transporter, periplasmic amino acid-binding protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6387..6890
DNA (504bp) protein (168aa)
Protein creA n=1 Tax=Rhizobium sp. RepID=L0NG52_RHISP
Conserved uncharacterized protein CreA {ECO:0000313|EMBL:CDP51741.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein; K05805 CreA protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_12
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7221..8777)
DNA (1557bp) protein (519aa)
alpha-L-arabinofuranosidase; K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55]
Alpha-N-arabinofuranosidase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EF92_9RHOB
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:ESW59791.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
SCNpilot_expt_1000_bf_scaffold_8060_curated_13
unknown

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8965..9156
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8060_curated_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9326..9961
DNA (636bp) protein (212aa)
Alkyl hydroperoxide reductase subunit C-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDW4_PELHB
Alkyl hydroperoxide reductase subunit C-like prote in {ECO:0000313|EMBL:CDP51743.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
alkyl hydroperoxide reductase
SCNpilot_expt_1000_bf_scaffold_8060_curated_15
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10390..12165
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y7S7_MESOW
Uncharacterized protein {ECO:0000313|EMBL:KKC31900.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_16
unknown

Not on your lists

comp(12258..13745)
DNA (1488bp) protein (496aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8060_curated_17
unknown

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comp(13697..13951)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8060_curated_18
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14523..14852
DNA (330bp) protein (110aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Sensor protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9F6_PELHB
sensor protein
SCNpilot_expt_1000_bf_scaffold_8060_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14878..16101)
DNA (1224bp) protein (408aa)
cystathionine or methionine gamma-lyase (EC:4.4.1.-) rbh
Putative cystathionine or methionine gamma-lyase {ECO:0000313|EMBL:CAE28066.1}; EC=4.4.1.- {ECO:0000313|EMBL:CAE28066.1};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
Putative cystathionine or methionine gamma-lyase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N6J0_RHOPA
SCNpilot_expt_1000_bf_scaffold_8060_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16234..16599
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R996_PELHB
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_expt_1000_bf_scaffold_8060_curated_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16596..17492
DNA (897bp) protein (299aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R997_PELHB
SCNpilot_expt_1000_bf_scaffold_8060_curated_22
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17609..18487
DNA (879bp) protein (293aa)
Chemotaxis protein methyltransferase CheR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R998_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB13319.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
chemotaxis protein CheR
Displaying 22 items

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