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SCNpilot_expt_1000_bf_scaffold_286_curated

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Displaying items 1-30 of 218 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_286_curated_1
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61..606)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J868_AGRRK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rpoE4; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_286_curated_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(609..809)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WYB0_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:KFC62523.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_286_curated_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

959..1753
DNA (795bp) protein (265aa)
Response regulator receiver n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8D5_MESCW
Two-component response regulator {ECO:0000313|EMBL:KKB80252.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
response regulator receiver
SCNpilot_expt_1000_bf_scaffold_286_curated_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1855..2643
DNA (789bp) protein (263aa)
histidine ABC transporter ATP-binding protein HisP; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Histidine ABC transporter, ATP-binding protein HisP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08220.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_286_curated_5
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2724..3485
DNA (762bp) protein (254aa)
His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H9_PELHB
His/Glu/Gln/Arg/opine family ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein
His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding protein {ECO:0000313|EMBL:AEQ52280.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_286_curated_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3546..4400
DNA (855bp) protein (285aa)
ABC transporter, permease protein, HisMQ family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I0_PELHB
ABC transporter, permease protein, HisMQ family {ECO:0000313|EMBL:CDP50340.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ABC transporter permease, HisMQ family; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_286_curated_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4397..5143
DNA (747bp) protein (249aa)
Histidine ABC transporter, permease protein HisM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I1_PELHB
Histidine ABC transporter, permease protein HisM {ECO:0000313|EMBL:CDP50341.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
histidine ABC transporter permease HisM; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_286_curated_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5143..6285
DNA (1143bp) protein (381aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I2_PELHB
Succinylglutamate desuccinylase {ECO:0000313|EMBL:KKB11913.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
succinylglutamate desuccinylase/aspartoacylase; K06987
SCNpilot_expt_1000_bf_scaffold_286_curated_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6411..7625)
DNA (1215bp) protein (405aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00106}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
mannonate dehydratase; K01686 mannonate dehydratase [EC:4.2.1.8]
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036138C6
SCNpilot_expt_1000_bf_scaffold_286_curated_10
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7635..8918)
DNA (1284bp) protein (428aa)
C4-dicarboxylate transport system permease large protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2K5_POLGS
C4-dicarboxylate transporter permease large protein
C4-dicarboxylate transport system permease large protein {ECO:0000313|EMBL:ADZ70919.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_286_curated_11
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8922..9443)
DNA (522bp) protein (174aa)
TRAP-type C4-dicarboxylate transport system, small permease component n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2K4_POLGS
TRAP-type C4-dicarboxylate transporter, small permease
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KEP68950.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
SCNpilot_expt_1000_bf_scaffold_286_curated_12
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9516..10496)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000370D669
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:ADZ70917.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_286_curated_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10571..11278
DNA (708bp) protein (236aa)
GntR-family transcriptional regulator n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2K2_POLGS
GntR family transcriptional regulator
GntR-family transcriptional regulator {ECO:0000313|EMBL:ADZ70916.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_286_curated_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11335..12393)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003820BEB
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB08863.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative sugar ABC transporter ATP-binding protein; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_286_curated_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12605..13726)
DNA (1122bp) protein (374aa)
iron-containing alcohol dehydrogenase; K00100 [EC:1.1.1.-]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00038244A1
4-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KKB08868.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_286_curated_16
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13879..14670
DNA (792bp) protein (264aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2KCT1_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KEQ06308.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_286_curated_17
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14667..15026)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain BL225C) RepID=F6BN51_SINMB
Uncharacterized protein {ECO:0000313|EMBL:KKC32215.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_286_curated_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15023..15637)
DNA (615bp) protein (205aa)
Putative membrane protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I3_PELHB
Putative membrane protein {ECO:0000313|EMBL:KFC62511.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_286_curated_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15755..16336
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5A027
Peptidase M15 {ECO:0000313|EMBL:KKB11917.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_286_curated_20

Not on your lists

16333..17232
DNA (900bp) protein (300aa)
Putative acetamidase/formamidase n=1 Tax=uncultured bacterium 1042 RepID=B8R8V4_9BACT
Putative acetamidase/formamidase {ECO:0000313|EMBL:ACF98110.1}; TaxID=548897 species="Bacteria; environmental samples.;" source="uncultured bacterium 1042.;"
acetamidase/formamidase protein
SCNpilot_expt_1000_bf_scaffold_286_curated_21
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17229..18254
DNA (1026bp) protein (342aa)
Putative oxidoreductase protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EX62_9RHIZ
Putative oxidoreductase protein {ECO:0000313|EMBL:CCV08558.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative dehydrogenase
SCNpilot_expt_1000_bf_scaffold_286_curated_22
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18251..18439
DNA (189bp) protein (63aa)
Putative phosphoesterase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EEZ3_THECK
phosphoesterase
Putative phosphoesterase {ECO:0000313|EMBL:AGA57725.1}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
SCNpilot_expt_1000_bf_scaffold_286_curated_23
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18443..19432)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000381886A
NAD-dependent epimerase {ECO:0000313|EMBL:KJB94528.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
NAD-dependent epimerase/dehydratase family protein
SCNpilot_expt_1000_bf_scaffold_286_curated_24
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19487..22120)
DNA (2634bp) protein (878aa)
UPI0003CE8636 related cluster n=1 Tax=unknown RepID=UPI0003CE8636
Uncharacterized protein {ECO:0000313|EMBL:ESY36271.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_286_curated_25
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22208..24736)
DNA (2529bp) protein (843aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003607D10
Caspase domain protein {ECO:0000313|EMBL:AID30628.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
peptidase C14 caspase catalytic subunit p20
SCNpilot_expt_1000_bf_scaffold_286_curated_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24866..25714
DNA (849bp) protein (283aa)
Choline/ethanolamine kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3M1_9RHIZ
Choline/ethanolamine kinase {ECO:0000313|EMBL:EHK52424.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
choline/ethanolamine kinase
SCNpilot_expt_1000_bf_scaffold_286_curated_27
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25704..26975)
DNA (1272bp) protein (424aa)
fuconate dehydratase n=1 Tax=Martelella mediterranea RepID=UPI000368053D
Fuconate dehydratase {ECO:0000313|EMBL:KFL25831.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
racemase
SCNpilot_expt_1000_bf_scaffold_286_curated_28
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26975..28081)
DNA (1107bp) protein (369aa)
L-fuconate dehydratase (EC:4.2.1.68)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000379F94E
Mandelate racemase {ECO:0000313|EMBL:KFL25833.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_286_curated_29
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28084..29169)
DNA (1086bp) protein (362aa)
Maltose/maltodextrin transport ATP-binding protein MalK {ECO:0000313|EMBL:CDP53392.1}; EC=3.6.3.19 {ECO:0000313|EMBL:CDP53392.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036A1453
sugar ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_286_curated_30
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29172..30032)
DNA (861bp) protein (287aa)
maltose ABC transporter permease n=1 Tax=Martelella mediterranea RepID=UPI000375B619
Maltose ABC transporter permease {ECO:0000313|EMBL:KFL25835.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative ABC-type transport system, permease component
Displaying items 1-30 of 218 in total

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