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SCNpilot_expt_1000_bf_scaffold_4278_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4278_curated_1
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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126..896
DNA (771bp) protein (257aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
Urocanate hydratase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN98_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4278_curated_2
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(911..1702)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E7D20
CoA-transferase subunit beta {ECO:0000313|EMBL:ENO81145.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
acyl CoA:acetate/3-ketoacid CoA transferase subunit beta
SCNpilot_expt_1000_bf_scaffold_4278_curated_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1714..2592)
DNA (879bp) protein (293aa)
putative CoA-transferase alpha subunit (EC:2.8.3.-)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000373C452
Coenzyme A transferase {ECO:0000313|EMBL:KGB53947.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2946..4145
DNA (1200bp) protein (400aa)
putative periplasmic binding ABC transporter protein n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557D2B
putative substrate-binding component of ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
Putative substrate-binding component of ABC transporter {ECO:0000313|EMBL:ACP26795.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_5
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4225..4536
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557D2C
Uncharacterized protein {ECO:0000313|EMBL:KFL53958.1}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_6
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4533..5306
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000377FC99
ABC transporter {ECO:0000313|EMBL:BAO29518.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_7
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5296..5961
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003694402
branched chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KCV67049.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_8
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6478..7893
DNA (1416bp) protein (472aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C7C72
branched chain amino acid ABC transporter inner membrane protein
Amino acid/amide ABC transporter membrane protein 2, HAAT family / amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ABE36811.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_9
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7890..8651
DNA (762bp) protein (254aa)
short-chain dehydrogenase (EC:1.3.1.-)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035EF6A9
Uncharacterized protein {ECO:0000313|EMBL:EQA98418.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_10
Leishmania mexicana, Leishmania, Kinetoplastida, Eukaryota

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comp(9665..10642)
DNA (978bp) protein (326aa)
WGS CADB00000000 data, contig 91 (Fragment) n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) RepID=E8NHR5_LEIMU
hypothetical protein
WGS CADB00000000 data, contig 91 {ECO:0000313|EMBL:CBZ41040.1}; Flags: Fragment;; TaxID=929439 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania.;" source="Leishmania mexicana (strain MHOM/GT/2001/U1103).;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_11
bacterium YEK0313, Bacteria

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comp(10976..11731)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003614E54
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 {ECO:0000313|EMBL:CEJ10994.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_4278_curated_12
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11846..12511)
DNA (666bp) protein (222aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
UPI0003CEE40B related cluster n=1 Tax=unknown RepID=UPI0003CEE40B
SCNpilot_expt_1000_bf_scaffold_4278_curated_13
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12793..14745
DNA (1953bp) protein (651aa)
lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003493109
Uncharacterized protein {ECO:0000313|EMBL:EXL09488.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
lipopolysaccharide biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_14
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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14832..16088
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000378E23E
glycosyl transferase
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
SCNpilot_expt_1000_bf_scaffold_4278_curated_15

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comp(16093..16392)
DNA (300bp) protein (100aa)
Glycosyl transferase, WecB/TagA/CpsF family n=1 Tax=Citreicella sp. SE45 RepID=D0D9R2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN94395.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sugar transferase
SCNpilot_expt_1000_bf_scaffold_4278_curated_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16878..18353)
DNA (1476bp) protein (492aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSZ1_RHITR
Uncharacterized protein {ECO:0000313|EMBL:CDX13647.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_17
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18427..19770)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KN47_MESAW
Uncharacterized protein {ECO:0000313|EMBL:EZQ13670.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_18
unknown

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comp(19863..20501)
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4278_curated_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20515..21216
DNA (702bp) protein (234aa)
Uncharacterized protein {ECO:0000313|EMBL:EZQ13672.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
gme:Gmet_1490 polysaccharide biosynthesis protein id=718742 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
polysaccharide biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_20
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21227..22546)
DNA (1320bp) protein (440aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60CF5_METCA
Uncharacterized protein {ECO:0000313|EMBL:EZQ13668.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
glycosyl transferase group 1 family protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_21
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22533..23762)
DNA (1230bp) protein (410aa)
UPI0003CF2E24 related cluster n=1 Tax=unknown RepID=UPI0003CF2E24
Uncharacterized protein {ECO:0000313|EMBL:EXL09482.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4278_curated_22
Corynebacterium striatum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24019..24993
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Leishmania major RepID=E9AEK6_LEIMA
hypothetical protein
Cysteine-rich domain protein {ECO:0000313|EMBL:EEI77598.1}; TaxID=525268 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium striatum ATCC 6940.;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25102..26001
DNA (900bp) protein (300aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD 1 n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=FOLD1_RHILO rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_expt_1000_bf_scaffold_4278_curated_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26006..27181)
DNA (1176bp) protein (392aa)
Oxidoreductase domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKL1_9RHIZ
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:EHK58709.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
oxidoreductase domain-containing protein
Displaying 24 items

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